Geology topics

J.S. Schaeffer

Publications and source records attributed to J.S. Schaeffer.

9 recordsLinked to original sources

USGS2011

Classification tree models for predicting distributions of michigan stream fish from landscape variables

Traditionally, fish habitat requirements have been described from local-scale environmental variables. However, recent studies have shown that studying landscape-scale processes improves our understanding of what drives species assemblages and distribution patterns across the landscape. Our goal was to learn more about constraints on the distribution of Michigan stream fish by examining landscape-scale habitat variables. We used classification trees and landscape-scale habitat variables to create and validate presence-absence models and relative abundance models for Michigan stream fishes. We developed 93 presence-absence models that on average were 72% correct in making predictions for an independent data set, and we developed 46 relative abundance models that were 76% correct in making predictions for independent data. The models were used to create statewide predictive distribution and abundance maps that have the potential to be used for a variety of conservation and scientific purposes. ?? Copyright by the American Fisheries Society 2008.

Transactions of the American Fisheries Society↗

USGS2009

Abundance and distribution of benthic macroinvertebrates in offshore soft sediments in Western Lake Huron, 2001-2007

Invasive species have had major impacts on the Great Lakes. This is especially true of exotic dreissenid mussels which are associated with decreased abundance of native macroinvertebrates and changes in food availability for fish. Beginning in 2001, we added a benthic macroinvertebrate survey to the USGS-Great Lakes Science Center's annual fall prey fish assessment of Lake Huron to monitor abundance of macrobenthos. Mean abundance of Diporeia, the most abundant benthic taxon in Lake Huron reported by previous investigators, declined greatly between 2001 and 2007. Diporeia was virtually absent at 27-m sites by 2001, decreased and was lost completely from 46-m depths by 2006, but remained present at reduced densities at 73-m sites. Dreissenids in our samples were almost entirely quagga mussels Dreissena bugensis. Zebra mussels Dreissena polymorpha were virtually absent from our samples, suggesting that they were confined to nearshore areas shallower than we sampled. Loss of Diporeia at individual sites was associated with arrival of quagga mussels, even when mussel densities were low. Quagga mussel density peaked during 2002, then decreased thereafter. During the study quagga mussels became established at most 46-m sites, but remained rare at 73-m sites. Length frequency distributions suggest that initial widespread recruitment may have occurred during 2001-2002. Like other Great Lakes, Lake Huron quagga mussels were associated with decreased abundance of native taxa, but negative effects occurred even though dreissenid densities were much lower. Dreissenid effects may extend well into deep oligotrophic habitats of Lake Huron.

Journal of Great Lakes Research↗

USGS2009

Fall diet and bathymetric distribution of deepwater sculpin (Myoxocephalus thompsonii) in Lake Huron

Deepwater sculpin Myoxocephalus thompsonii are an important component of Great Lake's offshore benthic food webs. Recent declines in deepwater sculpin abundance and changes in bathymetric distribution may be associated with changes in the deepwater food web of Lake Huron, particularly, decreased abundance of benthic invertebrates such as Diporeia. To assess how deepwater sculpins have responded to recent changes, we examined a fifteen-year time series of spatial and temporal patterns in abundance as well as the diets of fish collected in bottom trawls during fall of 2003, 2004, and 2005. During 1992-2007, deepwater sculpin abundance declined on a lake-wide scale but the decline in abundance at shallower depths and in the southern portion of Lake Huron was more pronounced. Of the 534 fish examined for diet analysis, 97% had food in the stomach. Mysis, Diporeia, and Chironomidae were consumed frequently, while sphaerid clams, ostracods, fish eggs, and small fish were found in only low numbers. We found an inverse relationship between prevalence of Mysis and Diporeia in diets that reflected geographic and temporal trends in abundance of these invertebrates in Lake Huron. Because deepwater sculpins are an important trophic link in offshore benthic food webs, declines in population abundance and changes in distribution may cascade throughout the food web and impede fish community restoration goals.

Journal of Great Lakes Research↗

USGS2009

Heritage strain and diet of wild young of year and yearling lake trout in the main basin of Lake Huron

Restoration of lake trout Salvelinus namaycush stocks in Lake Huron is a fish community objective developed to promote sustainable fish communities in the lake. Between 1985 and 2004, 12.65 million lake trout were stocked into Lake Huron representing eight different genetic strains. Collections of bona fide wild fish in USGS surveys have increased in recent years and this study examined the ancestry and diet of fish collected between 2004 and 2006 to explore the ecological role they occupy in Lake Huron. Analysis of microsatellite DNA revealed that both pure strain and inter-strain hybrids were observed, and the majority of fish were classified as Seneca Lake strain or Seneca Lake hybrids. Diets of 50 wild age-0 lake trout were examined. Mysis, chironomids, and zooplankton were common prey items of wild age-0 lake trout. These results indicate that stocked fish are successfully reproducing in Lake Huron indicating a level of restoration success. However, continued changes to the benthic macroinvertebrate community, particularly declines of Mysis, may limit growth and survival of wild fish and hinder restoration efforts.

Journal of Great Lakes Research↗

USGS2009

The Lake Huron pelagic fish community: persistent spatial pattern along biomass and species composition gradients

Spatial patterns in the biomass of pelagic fish in Lake Huron have persisted over 10 years even though biomass decreased 86% and the fish community shifted from dominance by non-native species (rainbow smelt, Osmerus mordax) to dominance by native species (bloater, Coregonus hoyi). Based on multivariate analyses of acoustic biomass data and abiotic variables from the years 1997, 2004, 2005, and 2007, the strength of relationships between abiotic variables (primarily bottom depth) and fish community composition gradients decreased with fish biomass, suggesting that at high biomass, the influence of the measured abiotic variables is minimal. We observed consistently higher biomass in the North Channel and Georgian Bay than in the Main Basin, and as a result, we conclude that these smaller basins are likely important contributors to lakewide fish biomass, production, and dynamics. These results suggest that at current biomass levels, efforts to understand ecology, population dynamics, and lakewide abundance need to incorporate the effects of depth and geographic variation on fish distributions and ecology.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2007

Environmental and ecological conditions surrounding the production of large year classes of walleye ( Sander vitreus ) in Saginaw Bay, Lake Huron

The Saginaw Bay walleye population ( Sander vitreus ) has not fully recovered from a collapse that began in the 1940s and has been dependent on stocking with only limited natural reproduction. Beginning in 2003, and through at least 2005, reproductive success of walleye surged to unprecedented levels. The increase was concurrent with ecological changes in Lake Huron and we sought to quantitatively model which factors most influenced this new dynamic. We developed Ricker stock-recruitment models for both wild and stock fish and evaluated them with second-order Akaike's information criterion to find the best model. Independent variables included adult alewife ( Alosa pseudoharengus ) abundance, spring water temperatures, chlorophyll a levels and total phosphorus levels. In all, 14 models were evaluated for production of wild age-0 walleyes and eight models for stocked age-0 walleyes. For wild walleyes, adult alewife abundance was the dominant factor, accounting for 58% of the variability in age-0 abundance. Production of wild age-0 fish increased when adult alewives were scarce. The only other plausible factor was spring water temperature. Predictably, alewife abundance was not important to stocked fish; instead temperature and adult walleye abundance were more significant variables. The surge in reproductive success for walleyes during 2003–2005 was most likely due to large declines in adult alewives in Lake Huron. While relatively strong year classes (age-1 and up) have been produced as a result of increased age-0 production during 2003–2005, the overall magnitude has not been as great as the initial age-0 abundance originally suggested. It appears that over-winter mortality is higher than in the past and may stem from higher predation or slower growth (lower condition for enduring winter thermal stress). From this it appears that low alewife abundance does not assure strong walleye year classes in Saginaw Bay but may be a prerequisite for them.

Journal of Great Lakes Research↗

USGS2007

Evidence of widespread natural reproduction by lake trout Salvelinus namaycush in the Michigan waters of Lake Huron

Localized natural reproduction of lake trout Salvelinus namaycush in Lake Huron has occurred since the 1980s near Thunder Bay, Michigan. During 2004–2006, USGS spring and fall bottom trawl surveys captured 63 wild juvenile lake trout at depths ranging from 37–73 m at four of five ports in the Michigan waters of the main basin of Lake Huron, more than five times the total number captured in the previous 30-year history of the surveys. Relatively high catches of wild juvenile lake trout in bottom trawls during 2004–2006 suggest that natural reproduction by lake trout has increased and occurred throughout the Michigan waters of the main basin. Increased catches of wild juvenile lake trout in the USGS fall bottom trawl survey were coincident with a drastic decline in alewife abundance, but data were insufficient to determine what mechanism may be responsible for increased natural reproduction by lake trout. We recommend further monitoring of juvenile lake trout abundance and research into early life history of lake trout in Lake Huron.

Journal of Great Lakes Research↗

USGS2005

Burrowing mayflies as indicators of ecosystem health: Status of populations in western Lake Erie, Saginaw Bay and Green Bay

The U.S. Environmental Protection Agency and Environment Canada are supporting the development of indicators of ecosystem health that can be used to report on progress in restoring and maintaining the Great Lakes ecosystem, as called for in the Great Lakes Water Quality Agreement between the United States and Canada. One indicator under development is based on burrowing mayflies (Hexagenia: Ephemeroptera: Ephemeridae). We sampled in western Lake Erie, Saginaw Bay (Lake Huron), and Green Bay (Lake Michigan) in spring 2001 at 117 stations covering about 1,870 km 2 of lake bed, to determine the status of nymphal populations of Hexagenia, and to provide information that would further the technical development of an indicator of ecosystem health based on Hexagenia. In western Lake Erie, density and biomass of nymphs were generally highest on fine-grained substrate in offshore waters and were lower on coarser substrates in near shore waters. Nymphs were virtually absent from Saginaw Bay, where only one nymph was collected at 28 stations. Nymphs were collected at only 6 of 48 stations in Green Bay, and density and biomass were highest at the northern end of the bay. Polluted sediments are likely responsible for the absence or low density and biomass of nymphs observed on fine-grained substrates in western Lake Erie, Saginaw Bay, and Green Bay, all of which historically supported abundant populations.

Green Bay, Lake Erie, Lake Huron, Lake Michigan, S↗

USGS1999

Field test of two energetic models for yellow perch

Field data from a population of yellow perch Perca flavescens in Saginaw Bay, Lake Huron, were used to evaluate the ability of two energetic models to predict consumption by yellow perch. Field estimates of daily ration for age‐1–4 fish during May through October 1987 and 1988 were compared with independent predictions made by the Wisconsin energetic model and an energetic model developed by Karås and Thoresson. Predictions of daily ration using the Wisconsin model were lower than daily rations estimated from field data for all ages, primarily due to poor model–field agreement at temperatures above 22°C. This caused estimates of cumulative consumption from the Wisconsin model to be 25–50% lower than field estimates. Predictions of daily ration by the Karås–Thoresson model agreed with field estimates over a temperature range of 10–26°C for age‐1–3 yellow perch but not for older fish. Despite improvement, model predictions of cumulative consumption were 2–35% lower than field estimates. Although these tests of predicted and estimated rations may provide insight into which model produced more accurate results, it must be emphasized that field measures of daily ration are also estimates and may be in error, particularly at temperatures above 22°C where gastric evacuation rates were estimated. The Karås–Thoresson modification of the Wisconsin energetic model produced better fits to field ration data and is recommended for model applications.

Michigan↗