Gabriel Reuben Smith | Geology Reports

USGS2025

A global database of soil microbial phospholipid fatty acids and enzyme activities

Soil microbes drive ecosystem function and play a critical role in how ecosystems respond to global change. Research surrounding soil microbial communities has rapidly increased in recent decades, and substantial data relating to phospholipid fatty acids (PLFAs) and potential enzyme activity have been collected and analysed. However, studies have mostly been restricted to local and regional scales, and their accuracy and usefulness are limited by the extent of accessible data. Here we aim to improve data availability by collating a global database of soil PLFA and potential enzyme activity measurements from 12,258 georeferenced samples located across all continents, 5.1% of which have not previously been published. The database contains data relating to 113 PLFAs and 26 enzyme activities, and includes metadata such as sampling date, sample depth, and soil pH, total carbon, and total nitrogen. This database will help researchers in conducting both global- and local-scale studies to better understand soil microbial biomass and function.

Scientific Data↗

USGS2022

The biogeography of relative abundance of soil fungi versus bacteria in surface topsoil

Fungi and bacteria are the two dominant groups of soil microbial communities worldwide. By controlling the turnover of soil organic matter, these organisms directly regulate the exchange of carbon between the soil and the atmosphere. Fundamental differences in the physiology and life history of bacteria and fungi suggest that variation in the biogeography of soil fungal and bacterial relative abundance could drive striking differences in carbon decomposition and soil organic matter formation across different biomes. However, a lack of global and predictive information on the distribution of these organisms in terrestrial 45 ecosystems has prevented the inclusion of soil fungal and bacterial relative abundance and the associated processes into global biogeochemical models. Here, we used a global scale dataset in the top soil surface (>3000 distinct observations of soil fungal and bacterial abundance) to generate the first quantitative and spatially high resolution (1km) explicit map of soil fungal proportion, defined as fungi/fungi + bacteria, across terrestrial ecosystems. We reveal striking latitudinal trends where fungal dominance increases in cold and high latitude environments with large soil carbon stocks. There was strong non-linear response of fungal 50 dominance to environmental gradient, i.e., mean annual temperature (MAT) and net primary productivity (NPP). Fungi and bacteria dominated in regions with low and high MAT and NPP, respectively, thus representing slow vs. fast soil energy channels, a concept with a long history in soil ecology. These high-resolution models provide the first steps towards representing the major soil microbial groups and their functional differences in global biogeochemical models to improve predictions of soil organic matter turnover under current and future climate scenarios

Earth System Science Data↗