Geology topics

Eric B. Taylor

Publications and source records attributed to Eric B. Taylor.

5 recordsLinked to original sources

USGS2024

Genomic characterization of highly pathogenic H5 avian influenza viruses from Alaska during 2022 provides evidence for genotype-specific trends of spatiotemporal and interspecies dissemination

The ongoing panzootic of highly pathogenic H5 clade 2.3.4.4b avian influenza (HPAI) spread to North America in late 2021, with detections of HPAI viruses in Alaska beginning in April 2022. HPAI viruses have since spread across the state, affecting many species of wild birds as well as domestic poultry and wild mammals. To better understand the dissemination of HPAI viruses spatiotemporally and among hosts in Alaska and adjacent regions, we compared the genomes of 177 confirmed HPAI viruses detected in Alaska during April – December 2022. Results suggest multiple viral introductions into Alaska between November 2021 and August or September 2022, as well as dissemination to areas within and outside of the state. Viral genotypes differed in their spatiotemporal spread, likely influenced by timing of introductions relative to population immunity. We found evidence for dissemination of HPAI viruses between wild bird species, wild birds and domestic poultry, as well as wild birds and wild mammals. Continued monitoring for and genomic characterization of HPAI viruses in Alaska can improve our understanding of the evolution and dispersal of these economically costly and ecologically relevant pathogens.

Emerging Microbes & Infections↗

USGS2022

Evolutionary and ecological connectivity in westslope cutthroat trout (Oncorhynchus clarkii lewisi) and mountain whitefish (Prosopium williamsoni) in relation to the potential influences of Boundary Dam, Washington, Idaho, and parts of British Columbia

In this report, we consider evolutionary and ecological connectivity for westslope cutthroat trout ( Oncorhynchus clarkii lewisi ) and mountain whitefish ( Prosopium williamsoni ) within the Pend Oreille River in northeastern Washington State, northern Idaho, and adjacent portions of southeastern British Columbia, Canada. Specifically, we focused on the rationale for active translocation of individuals of these species upstream from Boundary Dam both in the context of natural patterns of pre-dam evolutionary connectivity as well as preserving contemporary ecological and evolutionary characteristics of local extant populations. Boundary Dam impounds the Pend Oreille River (called the Pend d’Oreille River in Canada) with the resulting reservoir inundating two historical barriers to upstream movement of fish (Metaline Falls and Z Canyon). Historically, it was thought these barriers impeded the upstream movement of westslope cutthroat trout and mountain whitefish, as well as Pacific salmon ( Oncorhynchus spp.), steelhead trout ( O. mykiss ), and other resident species such as bull trout ( Salvelinus confluentus ). To address connectivity, we consider historical and contemporary processes and features. This review includes an assessment of postglacial processes within the Pend Oreille River and systems upstream that include Priest Lake, Lake Pend Oreille, the Clark Fork River, features of Boundary Reservoir and its tributaries, and areas downstream in the Pend Oreille River such as the Salmo River. Based on this information, we then give a more detailed review of existing genetic and ecological data to summarize what is known about connectivity for westslope cutthroat trout and mountain whitefish. Our assessment of the collective evidence leads us to conclude that moving fish upstream over Boundary Dam is not warranted if the management objective is to maintain natural patterns of evolutionary and ecological connectivity or to conserve unique ecological and evolutionary characteristics of extant local populations of these species in the system. These findings parallel that of a previous analysis of bull trout. Although we were able to arrive at well-supported conclusions in relation to Boundary Dam, we suggest that more work on connectivity further upstream in the Pend Oreille River would help to better understand the role of historical processes and dams further up in the system.

British Columbia, Idaho, Washington↗

USGS2020

Conservation genomics in a changing arctic

Although logistically challenging to study, the Arctic is a bellwether for global change and is becoming a model for questions pertinent to the persistence of biodiversity. Disruption of Arctic ecosystems is accelerating, with impacts ranging from mixing of biotic communities to individual behavioral responses. Understanding these changes is crucial for conservation and sustainable economic development. Genomic approaches are providing transformative insights into biotic responses to environmental change, but have seen limited application in the Arctic due to a series of limitations. To meet the promise of genome analyses, we urge rigorous development of biorepositories from high latitudes to provide essential libraries to improve the conservation, monitoring, and management of Arctic ecosystems through genomic approaches.

Trends in Ecology and Evolution↗

USGS2016

Conservation of native Pacific trout diversity in western North America

Pacific trout Oncorhynchus spp. in western North America are strongly valued in ecological, socioeconomic, and cultural views, and have been the subject of substantial research and conservation efforts. Despite this, the understanding of their evolutionary histories, overall diversity, and challenges to their conservation is incomplete. We review the state of knowledge on these important issues, focusing on Pacific trout in the genus Oncorhynchus. Although most research on salmonid fishes emphasizes Pacific salmon, we focus on Pacific trout because they share a common evolutionary history, and many taxa in western North America have not been formally described, particularly in the southern extent of their ranges. Research in recent decades has led to the revision of many hypotheses concerning the origin and diversification of Pacific trout throughout their range. Although there has been significant success at addressing past threats to Pacific trout, contemporary and future threats represented by nonnative species, land and water use activities, and climate change pose challenges and uncertainties. Ultimately, conservation of Pacific trout depends on how well these issues are understood and addressed, and on solutions that allow these species to coexist with a growing scope of human influences.

Fisheries↗

USGS2014

Bull trout in the Boundary System: managing connectivity and the feasibility of a reintroduction in the lower Pend Oreille River, northeastern Washington

Many of the World’s rivers are influenced by large dams (>15 m high) most of which have fragmented formerly continuous habitats, and significantly altered fish passage, natural flow, temperature, and sediment fluxes (Nilsson and others, 2005; Arthington, 2012; Liermann and others, 2012). In the Pacific Northwest, dams on major rivers have been a major focus for fishery managers, primarily in regard to passage of anadromous salmonids (principally Pacific salmon and steelhead trout [ Oncorhynchus mykiss ], for example, Ferguson and others, 2011), but more recently other species, such as Pacific lamprey ( Entosphenus tridentatus ) and resident (non-anadromous) salmonids, are receiving more attention (Neraas and Spruell, 2001; Moser and others, 2002; Muhlfeld and others, 2012). In the case of resident salmonids, fish can adopt a wide range of migratory behaviors that often bring them into mainstem rivers where they can come into direct contact with large dams. When this occurs, some of the most important direct effects of dams on salmonids include barriers to upstream and downstream movement and mortality associated with entrainment within the dam or spill over dams. Biologically, these direct impacts can lead to (1) disruption of natural historical (pre-dam) genetic and demographic connectivity among local populations, (2) loss of access to historically used migratory destinations, (3) loss of individuals to the population through mortality associated with entrainment. In this report, we address these issues for the case of Boundary Dam, located immediately south of the Canadian border on the lower Pend Oreille River in northeastern Washington (fig. 1). Specifically, we addressed the following objectives: Evaluate the justification for bull trout ( Salvelinus confluentus ) passing over Boundary Dam in the context of likely historical patterns of gene flow that occurred prior to dam construction, current patterns of movement, and status of existing populations. Assess the role of passage over Boundary Dam, in the context of other factors in the system that may influence the feasibility of establishing a self-sustaining bull trout population in the Boundary system.

Washington↗