Geology topics

Dewayne A. Fox

Publications and source records attributed to Dewayne A. Fox.

10 recordsLinked to original sources

USGS2024

Genetic evidence for the presence of wild-caught sturgeons in commercial markets in Georgia

Sturgeons (Family: Acipenseridae) are among the most endangered taxa worldwide. Significant resources have been invested into the conservation of global sturgeon populations, including the development of commercial aquaculture programs. These programs are intended to improve conservation outcomes by reducing the harvest of wild populations while still meeting commercial demand for sturgeon products. However, there is growing concern that commercial aquaculture programs may contribute to wild population declines through continued, illegal harvest and the escape and/or release of captive individuals into wild environments. These concerns may be particularly acute in the country of Georgia which, despite its small territory and altered landscape, is a globally significant hotspot for sturgeon diversity. In order to understand the potential threat of captive culture on wild sturgeon populations in Georgia, we used mitochondrial DNA sequencing and microsatellite analyses to identify the species and origin of sturgeons encountered in commercial settings. Microsatellite analyses showed significant differentiation between wild and commercial Russian sturgeon populations and highlighted the potential for wild-caught individuals to be present in coastal markets in Georgia. The analyses of mitochondrial haplotypes also suggested that commercial markets may contain sturgeon species that are not native to the region. Overall, our results suggest that wild sturgeon populations may still be exploited to support captive aquaculture programs and commercial sales.

Diversity↗

USGS2024

Spatiotemporal patterns in habitat use of natal and non-natal adult Atlantic sturgeon in two spawning rivers

Background Monitoring movement across an organism’s ontogeny is often challenging, particularly for long-lived or wide-ranging species. When empirical data are unavailable, general knowledge about species’ ecology may be used to make assumptions about habitat use across space or time. However, inferences about habitat use based on population-level ecology may overlook important eco-evolutionary contributions from individuals with heterogenous ethologies and could diminish the efficacy of conservation and management. Methods We analyzed over a decade of acoustic telemetry data to understand individual differences in habitat use of federally endangered adult Atlantic sturgeon ( Acipenser o. oxyrinchus ) in the Delaware and Hudson rivers during spawning season. In particular, we sought to understand whether sex or natal origin could predict patterns in habitat use, as there is a long-held assumption that adult Atlantic sturgeon seldom stray into non-natal rivers. Results In both rivers, migration timing, spawning habitat occupancy, and maximum upstream migration distance were similar between natal and non-natal individuals. While non-natal individuals represented only 13% of fish detected in the Hudson River, nearly half of all tagged fish detected in the Delaware River were non-natal and generally occupied freshwater habitats longer than natal individuals. In both systems males had more heterogenous patterns of habitat use and longer duration of occupancy than did females. Conclusions This study demonstrates the importance of non-natal rivers for fulfilling ontogenetic habitat requirements in Atlantic sturgeon. Our results may also highlight an opportunity to improve conservation and management by extending habitat designations to account for more heterogenous patterns in individual habitat use in non-natal freshwater environments.

Delaware↗

USGS2024

Validation of a molecular sex marker in three sturgeons from eastern North America

Despite the importance of sex-specific information for sturgeon conservation and management, sex identification has been a major challenge outside of mature adults on spawning grounds. Recent work identified a sex-specific locus ( AllWSex2 ) that appears to be broadly conserved across many Acipenserids, but the assay was not validated for all species within the family. We tested the AllWSex2 marker in three sturgeon taxa (shortnose sturgeon Acipenser brevirostrum , Gulf sturgeon A. oxyrhinchus desotoi , and Atlantic sturgeon A. oxyrhinchus oxyrhinchus ) from the Atlantic and Gulf of Mexico Coasts of North America to validate its use for sex identification. Our results indicate AllWSex2 is conserved in all three taxa, presenting a new opportunity to derive sex-specific information from tissue samples, which are routinely collected from these taxa. We found high concordance (range: 97–100%) between genotypic and phenotypic/histological methods, suggesting the assay is broadly effective. However, the small amount of discordance between the methods (< 3%) suggests further refinement may be possible.

Journal of Applied Ichthyology↗

USGS2022

Decades of global sturgeon conservation efforts are threatened by an expanding captive culture industry

After centuries of overexploitation and habitat loss, many of the world's sturgeon (Acipenseridae) populations are at the brink of extinction. Although significant resources are invested into the conservation and restoration of imperiled sturgeons, the burgeoning commercial culture industry poses an imminent threat to the persistence of many populations. In the past decade, the number and distribution of captive sturgeon facilities has grown exponentially and now encompasses diverse interest groups ranging from hobby aquarists to industrial-scale commercial facilities. Expansion of sturgeon captive culture has largely fallen outside the purview of existing regulatory frameworks, raising concerns that continued growth of this industry has real potential to jeopardize conservation of global sturgeon populations. Here, we highlight some of the most significant threats commercial culture poses to wild populations, with particular emphasis on how releases can accelerate wild population declines through mechanisms such as hybridization, introgression, competition, and disease transmission. We also note that in some circumstances, commercial captive culture has continued to motivate harvest of wild populations, potentially accelerating species' declines. Given the prevalence and trajectory of sturgeon captive culture programs, we comment on modifications to regulatory frameworks that could improve the ability of captive culture to support wild sturgeon conservation.

Fisheries Magazine↗

USGS2022

Evaluating sources of bias in pedigree-based estimates of breeding population size

Applications of genetic-based estimates of population size are expanding, especially for species for which traditional demographic estimation methods are intractable due to the rarity of adult encounters. Estimates of breeding population size ( N S ) are particularly amenable to genetic-based approaches as the parameter can be estimated using pedigrees reconstructed from genetic data gathered from discrete juvenile cohorts, therefore eliminating the need to sample adults in the population. However, a critical evaluation of how genotyping and sampling effort influence bias in pedigree reconstruction, and how these biases subsequently influence estimates of N S , is needed to evaluate the efficacy of the approach under a range of scenarios. We simulated a model system to understand the interactive effects of genotyping and sampling effort on error in genetic pedigrees reconstructed from the program COLONY . We then evaluated how errors in pedigree reconstruction influenced bias and precision in estimates of N S using three different rarefaction estimators. Results indicated that pedigree error can be minimal when adequate genetic data are available, such as when juvenile sample sizes are large and/or individuals are genotyped at many informative loci. However, even in cases for which data are limited, using results of the simulation analysis to understand the magnitude and sources of bias in reconstructed pedigrees can still be informative when estimating N S . We applied results of the simulation analysis to evaluate Nˆ S for a population of federally endangered Atlantic sturgeon ( Acipenser oxyrinchus oxyrinchus ) in the Delaware River, USA. Our results indicated that N S is likely to be three orders of magnitude lower compared with historic breeding population sizes, which is a considerable advancement in our understanding of the population status of Atlantic sturgeon in the Delaware River. Our analyses are broadly applicable in the design and interpretation of studies seeking to estimate N S and can help to guide conservation decisions when ecological uncertainty is high. The utility of these results is expected to grow as rapid advances in genetic technologies increase the popularity of genetic population monitoring and estimation.

Delaware, New Jersey, Pennsylvania↗

USGS2021

Establishment of a microsatellite genetic baseline for North American Atlantic sturgeon (Acipenser o. oxyrhinchus) and range-wide analysis of population genetics

Atlantic sturgeon ( Acipenser oxyrinchus oxyrinchus ) is a long-lived, anadromous species that is broadly distributed along the Atlantic coast of North America. Historic overharvest and habitat degradation resulted in significant declines to Atlantic sturgeon populations and, following decades of limited recovery, the species was listed under the Endangered Species Act of the United States in 2012. Given continued threats to recovery and limited information about population demography, there is a need for new tools to assist in Atlantic sturgeon conservation. Here, we present a range-wide microsatellite genetic baseline for North American Atlantic sturgeon that is comprised of 2510 individuals from 18 genetically distinct groups collected in 13 rivers and one estuary. Analysis of this baseline suggested that populations from the northern range of Atlantic sturgeon were more highly differentiated than those from the southern extent, where patterns of differentiation were complicated by rivers with genetically distinct spring and fall spawning runs and less geographic distance separating populations. Despite significant demographic bottleneck events, all populations showed at least moderate levels of genetic diversity across a suite of metrics. Additionally, individual-based assignment tests had over 80% accuracy for assigning individuals to their river of origin, highlighting the utility of this baseline for characterizing the composition of mixed-stock aggregations and understanding stock-specific vulnerability and recovery. The expanded spatial coverage of this baseline dataset enabled novel inferences about patterns of genetic differentiation and spawning phenology in Atlantic sturgeon which can be used to support conservation and management efforts.

Atlantic Coast↗

USGS2020

Integrating side-scan sonar and acoustic telemetry to estimate the annual spawning run size of Atlantic sturgeon in the Hudson River

There is considerable interest in evaluating the status and trends of sturgeon populations, yet many traditional approaches to estimating the abundance of fishes are intractable due to their biology and rarity. Side-scan sonar has recently emerged as an effective tool for censusing sturgeon in rivers, yet challenges remain for censusing open populations that may visit specific habitats over periods of time (e.g., spawning runs). We use a hierarchical model to integrate side-scan sonar with acoustic telemetry, to estimate the proportion of a spawning run fitted with acoustic tags (12%; 95% CRI = 8-16%) and extrapolate to the total run size in 2014. Our investigation represents a novel approach to generating run size estimates in a large river and provides the first estimate of Atlantic sturgeon spawning run size for the Hudson River (N ̂ = 466; 95% CRI = 310-745) since the fishery moratorium in the 1990’s. Our estimate suggests that the Hudson River holds one of the largest contemporary populations of Atlantic sturgeon, but also indicates that it remains sharply depleted relative to virgin conditions.

Hudson River↗

USGS2015

Origin of Atlantic Sturgeon collected off the Delaware coast during spring months

Atlantic Sturgeon Acipenser oxyrinchus oxyrinchus was federally listed under the U.S. Endangered Species Act as five distinct population segments (DPS). Currently, at least 18 estuaries coastwide host spawning populations and the viability of these vary, requiring differing levels of protection. Subadults emigrate from their natal estuaries to marine waters where they are vulnerable to bycatch; one of the major threats to the rebuilding of populations. As a result, identifying the population origin of Atlantic Sturgeon in coastal waters is critical to development of management plans intended to minimize interactions of the most imperiled populations with damaging fisheries. We used mitochondrial DNA control region sequencing and microsatellite DNA analyses to determine the origin of 261 Atlantic Sturgeon collected off the Delaware coast during the spring months. Using individual-based assignment (IBA) testing and mixed stock analysis, we found that specimens originated from all nine of our reference populations and the five DPSs used in the listing determination. Using IBA, we found that the Hudson River population was the largest contributor (38.3%) to our coastal collection. The James (19.9%) and Delaware (13.8%) river populations, at one time thought to be extirpated or nearly so, were the next largest contributors. The three populations combined in the South Atlantic DPS contributed 21% of specimens; the Altamaha River, the largest population in the South Atlantic DPS, only contributed a single specimen to the collection. While the origin of specimens collected on the Delaware coast was most likely within rivers of the New York Bight DPS (52.1%), specimens that originated elsewhere were also well represented. Genetic analyses provide a robust tool to identify the population origin of individual sturgeon outside of their natal estuaries and to determine the quantitative contributions of individual populations to coastal aggregations that are vulnerable to bycatch and other anthropogenic threats.

Delaware↗

USGS2010

Diversity in destinations, routes and timing of small adult and sub-adult striped bass Morone saxatilis on their southward autumn migration

Almost three-quarters of the 46 young adult and sub-adult striped bass Morone saxatilis that were acoustically tagged in Plum Island Estuary, Massachusetts, U.S.A., in the summer of 2006 were detected in one or more southern coastal arrays during their autumn migration. On the basis of the trajectories along which these M. saxatilis moved from feeding to overwintering areas, three migratory groups emerged. After leaving Plum Island Estuary, about half of the fish were detected only in a mid-latitude array, Long Island Sound. The other half of the tagged fish were detected during autumn and winter in a more southern array, the Delaware Estuary. This latter group of fish may have used two routes. Some travelled to the Delaware Estuary through Long Island Sound while other fish may have taken a second, more direct, coastal route that did not include Long Island Sound. Consequently, a seemingly homogeneous group of fish tagged at the same time in the same non-natal feeding location exhibited a diversity of southward movement patterns that could affect population-level processes. These three groups that differed in overwintering location and migration route could be movement contingents with migratory connectivity.

Massachusetts↗

USGS2000

Gulf sturgeon spawning migration and habitat in the Choctawhatchee River system, Alabama-Florida

Information about spawning migration and spawning habitat is essential to maintain and ultimately restore populations of endangered and threatened species of anadromous fish. We used ultrasonic and radiotelemetry to monitor the movements of 35 adult Gulf sturgeon Acipenser oxyrinchus desotoi (a subspecies of the Atlantic sturgeon A. oxyrinchus ) as they moved between Choctawhatchee Bay and the Choctawhatchee River system during the spring of 1996 and 1997. Histological analysis of gonadal biopsies was used to determine the sex and reproductive status of individuals. Telemetry results and egg sampling were used to identify Gulf sturgeon spawning sites and to examine the roles that sex and reproductive status play in migratory behavior. Fertilized Gulf sturgeon eggs were collected in six locations in both the upper Choctawhatchee and Pea rivers. Hard bottom substrate, steep banks, and relatively high flows characterized collection sites. Ripe Gulf sturgeon occupied these spawning areas from late March through early May, which included the interval when Gulf sturgeon eggs were collected. For both sexes, ripe fish entered the Choctawhatchee River significantly earlier and at a lower water temperature and migrated further upstream than did nonripe fish. Males entered the Choctawhatchee River at a lower water temperature than females. Results from histology and telemetry support the hypothesis that male Gulf sturgeon may spawn annually, whereas females require more than 1 year between spawning events. Upper river hard bottom areas appear important for the successful spawning of Gulf sturgeon, and care should be taken to protect against habitat loss or degradation of known spawning habitat.

Alabama, Florida↗