Geology topics

David S. Pilliod

Publications and source records attributed to David S. Pilliod.

At least 73 records · Page 4Linked to original sources

USGS2020

A round-robin evaluation of the repeatability and reproducibility of environmental DNA assays for dreissenid mussels

Resource managers may be hesitant to make decisions based on environmental (e)DNA results alone since eDNA is an indirect method of species detection. One way to reduce the uncertainty of eDNA is to identify laboratory‐based protocols that ensure repeatable and reproducible results. We conducted a double‐blind round‐robin analysis of probe‐based assays for DNA of dreissenid ( Dreissena spp.) mussels, which are prolific aquatic invaders that can cause significant economic and ecological impacts. DNA extract from water samples spiked with known amounts of dreissenid DNA and from water samples collected from waters with and without dreissenids were analyzed by four independent research laboratories. We used results to calculate detection repeatability within laboratories and assays, detection reproducibility among laboratories and assays, and estimated dreissenid DNA copy number precision and accuracy. Laboratory and assay repeatability and reproducibility of detection results were high, 91% and 92%, respectively. The estimated copy numbers were neither precise nor accurate for samples spiked with <773 gene copies. These results suggest that eDNA surveillance of dreissenid mussels, using the protocols evaluated herein, can generate reliable detection data for decision‐making. However, managers should be cautious about using the quantitative information often associated with eDNA detections, especially when DNA is at lower abundance. Our results provide strong support that eDNA has the potential to provide repeatable and reproducible evidence under varying laboratory conditions and for different sample water chemistries. This is reassuring since the demand for eDNA surveillance is widespread and number of laboratories that process eDNA samples is growing steadily.

California, Montana, Nevada, New York, Oregon, Was↗

USGS2020

Effects of snowpack, temperature, and disease on the demography of a wild population of amphibians

Understanding the demographic consequences of interactions among pathogens, hosts, and weather conditions is critical in determining how amphibian populations respond to disease and in identifying site-specific conservation actions that can be developed to bolster persistence of amphibian populations. We investigated population dynamics in Boreal Toads ( Anaxyrus boreas ) relative to abiotic (fall temperatures and snowpack) and biotic (the abundance of another anuran host and disease) characteristics of the local environment in Wyoming, USA. We used capture–recapture data and a multistate model where state was treated as a hidden Markov process to incorporate disease state uncertainty and assess our a priori hypotheses. Our results indicated that snowpack during the coldest week of winter is more influential to toad survival, disease transition probabilities, and the population-level prevalence of the amphibian chytrid fungus ( Batrachochytrium dendrobatidis ) in the spring, than temperatures in the fall or the presence of another host. As hypothesized, apparent survival at low (i.e., <25 cm) snowpack (0.22; confidence interval [CI] = 0.15–0.31) was lower than apparent survival at high snowpack (90.65; CI = 0.50–0.78). Our findings highlight the potential for local environmental factors, like snowpack, to influence disease and host persistence, and demonstrate the ecological complexity of disease effects on population demography in natural environments. This work further emphasizes the need for improved understanding of how climate change may influence the relationships among pathogens, hosts, and their environment for wild animal populations challenged by disease.

Wyoming↗

USGS2020

Conservation genetics of imperiled striped whipsnake in Washington

Conservation of wide-ranging species is aided by population genetic information that provides insights into adaptive potential, population size, interpopulation connectivity, and even extinction risk in portions of a species range. The Striped Whipsnake (Masticophis taeniatus) occurs across 11 western U.S. states and into Mexico but has experienced population declines in parts of its range, particularly in the state of Washington. We analyzed nuclear and mitochondrial DNA extracted from 192 shed skins, 63 muscle tissue samples, and one mouth swab to assess local genetic diversity and differentiation within and between the last known whipsnake populations in Washington. We then placed that information in a regional context to better understand levels of differentiation and diversity among whipsnake populations in the northwestern portion of the range of the species. Microsatellite data analyses indicated that there was comparable genetic diversity between the two extant Washington populations, but gene flow may be somewhat limited. We found moderate to high levels of genetic differentiation among states across all markers, including five microsatellites, two nuclear genes, and two mitochondrial genes. Pairwise state-level comparisons and dendrograms suggested that Washington whipsnakes are most closely related to those in Oregon, and distinct from Idaho, Nevada, and Utah, approximately following an isolation by distance model. We conclude that Washington populations of whipsnakes have experienced recent isolating events, but they have yet to lose genetic diversity. The longevity and high vagility of the species may provide opportunity for conservation of whipsnakes in the state as long as shrubland habitat is available

Washington↗

USGS2019

Pre‐fire vegetation drives post‐fire outcomes in sagebrush ecosystems: Evidence from field and remote sensing data

Understanding the factors that influence vegetation responses to disturbance is important because vegetation is the foundation of food resources, wildlife habitat, and ecosystem properties and processes. We integrated vegetation cover data derived from field plots and remotely sensed Landsat images in two focal areas over a 37‐yr period (1979–2016) to investigate how historical changes to community composition influence contemporary responses of vegetation to fire in sagebrush ecosystems in the Great Basin. Our objectives were (1) to quantify the magnitude and direction of change in the cover of native and exotic plant functional groups in relation to their exposure to fire; (2) to relate plant community changes to their historical composition, exposure to fire, and environmental conditions; and (3) to test for consistency of trends revealed by vegetation cover data derived from field plots and Landsat images. Historical (1979–1981) field data originated from 298 locations, Landsat‐derived data and contemporary (2011–2016) field data originated from 448 locations, and an expanded set of locations were included in some analyses of Landsat‐derived data. We found that areas burned by fire since the 1980s had higher annual herbaceous cover than unburned areas both historically and contemporarily. Models revealed a significant interaction between historical community composition and exposure to fire, which suggests that plots with historically high herbaceous cover were more susceptible to burning. Trends revealed by field and Landsat‐derived cover data were only partially consistent, potentially due in part to methods used to predict cover values from Landsat images, and the time period over which each data set was collected. Our results suggest that burned areas historically occupied by sagebrush‐dominated plant communities may have been invaded by exotic annuals prior to burning, possibly because of prior land uses, and after burning, have now transitioned to a persistent herbaceous‐dominated state. This type of state transition has important consequences for forage quality, wildlife habitat, soil nutrients, and future disturbances, such as drought and wildfire.

Oregon, Nevada↗

USGS2019

Integration of eDNA-based biological monitoring within the US Geological Survey’s national streamgage network

This study explores the feasibility and utility of integrating environmental DNA (eDNA) assessments of species occurrences into the United States (U.S.) Geological Survey’s national streamgage network. We used an existing network of five gages in southwest Idaho to explore the type of information that could be gained as well as the associated costs and limitations. Hydrologic technicians were trained in eDNA sampling protocols and they collected samples during routine monthly visits to streamgages over an entire water year (2016). We analyzed the eDNA in the filtered water samples to determine the presence of two fish species: bull trout and rainbow trout. We then modeled the spatiotemporal distribution of each species using discharge and temperature data. To assess the influence of the spatial distribution of the gages on the biological information obtained, we also collected eDNA samples from locations between the gages three times during the water year. We found eDNA monitoring at the five gages provided meaningful information about the distribution of both species, especially when detection probabilities accounted for variations in temperature and discharge. Sampling between the gages provided additional information about bull trout distribution — the rarer of the two species. Our study suggests the integration of eDNA sampling into a streamgage network is feasible and could provide a novel and powerful source of biological information for riverine ecosystems in the U.S.

Idaho, Nebraska↗

USGS2019

Adding invasive species bio-surveillance to the U.S. Geological Survey streamgage network

The costs of invasive species in the United States alone are estimated to exceed US$100 billion per year so a critical tactic in minimizing the costs of invasive species is the development of effective, early-detection systems. To this end, we evaluated the efficacy of adding environmental (e)DNA surveillance to the U.S. Geological Survey (USGS) streamgage network, which consists of > 8,200 streamgages nationwide systemically visited by USGS hydrologic technicians. Incorporating strategic eDNA sample collection during routine streamgage visits could provide early detection surveillance of aquatic invasive species with minimal additional cost. For this evaluation, USGS hydrologic technicians collected monthly eDNA water samples, May – September 2018, from streamgages downstream of reservoirs in the Columbia River Basin thought to be vulnerable to invasive dreissenid mussel ( Dreissenidae spp.) establishment. We tested water samples for dreissenid mussel DNA and also for kokanee ( Oncorhynchus nerka ) and yellow perch ( Perca flavescens ) DNA; the two fishes were used to assess if streamgages are adequately located to provide early-detection eDNA surveillance of taxa known to be present in upstream reservoirs. No Columbia River Basin streamgage samples met our criteria for being scored as positive for dreissenid DNA. We did detect kokanee and yellow perch DNA at all streamgages downstream of reservoirs where these species are known to occur. Field collection, laboratory analyses, and personnel time required for collection of four eDNA samples at a streamgage site cost US$500 -US$600 (net). Given these results, incorporating eDNA biosurveillance into routine streamgage visits might decrease costs associated with an invasion since early detection maximizes the potential for eradication, containment, and mitigation.

Ecosphere↗

USGS2019

Transient population dynamics impede restoration and may promote ecosystem transformation after disturbance

The apparent failure of ecosystems to recover from increasingly widespread disturbance is a global concern. Despite growing focus on factors inhibiting resilience and restoration, we still know very little about how demographic and population processes influence recovery. Using inverse and forward demographic modelling of 531 post‐fire sagebrush populations across the western US, we show that demographic processes during recovery from seeds do not initially lead to population growth but rather to years of population decline, low density, and risk of extirpation after disturbance and restoration, even at sites with potential to support long‐term, stable populations. Changes in population structure, and resulting transient population dynamics, lead to a > 50% decline in population growth rate after disturbance and significant reductions in population density. Our results indicate that demographic processes influence the recovery of ecosystems from disturbance and that demographic analyses can be used by resource managers to anticipate ecological transformation risk.

Ecology Letters↗

USGS2019

Soil characteristics are associated with gradients of big sagebrush canopy structure after disturbance

Reestablishing shrub canopy cover after disturbance in semi-arid ecosystems, such as sagebrush steppe, is essential to provide wildlife habitat and restore ecosystem functioning. While several studies have explored the effects of landscape and climate factors on the success or failure of sagebrush seeding, the influence of soil properties on gradients of shrub canopy structure in successfully seeded areas remains largely unexplored. In this study, we evaluated associations between soil properties and gradients in sagebrush canopy structure in stands that had successfully reestablished after fire and subsequent seeding treatments. Using a dataset collected across the Great Basin, USA, of sagebrush stands that had burned and reestablished between 1986 and 2013, we tested soil depth and texture, soil surface classification, biological soil crusts plus mean historical precipitation, solar heatload, and fire history as modeling variables to explore gradients in sagebrush canopy structure growth in terms of cover, height, and density. Deeper soils were associated with greater sagebrush canopy structure development in terms of plant density and percent cover, coarser textured soils were associated with greater sagebrush cover and density, and more clayey soils were typically associated with greater height. Biological crust presence was also positively associated with enhanced sagebrush canopy growth, but adding more demographically or morphologically explicit descriptions of biocrust communities did not improve explanatory power. Increasing heatload had a negative effect on sagebrush canopy structure growth, and increased mean annual precipitation was only associated with greater sagebrush height. Given that conservation and restoration of the sagebrush steppe ecosystems has become a priority for land managers, the associations we identify between gradients in post-fire sagebrush canopy structure growth and field-identifiable soil characteristics may improve planning of land treatments for sagebrush restoration and the understanding of semi-arid ecosystem functioning and post-disturbance dynamics.

Ecosphere↗

USGS2019

The ecological uncertainty of wildfire fuel breaks: Examples from the sagebrush steppe

Fuel breaks are increasingly being implemented at broad scales (100s to 10,000s of square kilometers) in fire‐prone landscapes globally, yet there is little scientific information available regarding their ecological effects (eg habitat fragmentation). Fuel breaks are designed to reduce flammable vegetation (ie fuels), increase the safety and effectiveness of fire‐suppression operations, and ultimately decrease the extent of wildfire spread. In sagebrush ( Artemisia spp) ecosystems of the western US, installation of extensive linear fuel breaks is also intended to protect habitat, especially for the greater sage‐grouse ( Centrocercus urophasianus ), a species that is sensitive to habitat fragmentation. We examine this apparent contradiction in the Great Basin region, where invasive annual grasses have increased wildfire activity and threaten sagebrush ecosystems. Given uncertain outcomes, we examine how implementation of fuel breaks might (1) directly alter ecosystems, (2) create edges and edge effects, (3) serve as vectors for wildlife movement and plant invasions, (4) fragment otherwise contiguous sagebrush landscapes, and (5) benefit from scientific investigation intended to disentangle their ecological costs and benefits.

California, Idaho, Nevada, Oregon, Utah↗

USGS2019

Can’t see the random forest for the decision trees: Selecting predictive models for restoration ecology

Improving predictions of restoration outcomes is increasingly important to resource managers for accountability and adaptive management, yet there is limited guidance for selecting a predictive model from the multitude available. The goal of this paper was to identify an optimal predictive framework for restoration ecology using eleven modeling frameworks (including, machine learning, inferential, and ensemble approaches), and three data groups (field data, geographic data [GIS], and a combination thereof). We test this approach with a dataset from a large post-fire sagebrush reestablishment project in the Great Basin, USA. Predictive power varied among models and data groups, ranging from 58-79% accuracy. Finer scale field data generally had the greatest predictive power, although GIS data were present in the best models overall. An ensemble prediction computed from the ten models parameterized to field data was well above average for accuracy but was outperformed by others that prioritized model parsimony by selecting predictor variables based on rankings of their importance among all candidate models. The variation in predictive power among a suite of modeling frameworks underscores the importance of a model comparison and refinement approach that evaluates multiple models and data groups, and selects variables based on their contribution to predictive power. The enhanced understanding of factors influencing restoration outcomes accomplished by this framework has the potential to aid the adaptive management process for improving future restoration outcomes.

Restoration Ecology↗

USGS2019

Functional and geographic components of risk for climate sensitive vertebrates in the Pacific Northwest, USA

Rarity and life history traits inform multiple dimensions of intrinsic risk to climate and environmental change and can help systematically identify at-risk species. We quantified relative geographic rarity (area of occupancy), climate niche breadth, and life history traits for 114 freshwater fishes, amphibians, and reptiles in the U.S. Pacific Northwest. Our approach leveraged presence-only, publicly available data and traits-based inference to evaluate area of occupancy, climate sensitivity (i.e., climate niche breadth), and a Rarity and Climate Sensitivity (RCS) index of all species across multiple geographic extents, grain sizes, and data types. The RCS index was relatively stable across extents, grains, and data types, with climate sensitivity differentiating species with otherwise similar areas of occupancy. We also found that species with sensitivity-associated traits (e.g., long generation time, low fecundity) were not necessarily the same species identified as at-risk with geographical approaches (small range size, small climate niche breadth). Many multispecies assessments using coarse-scale data (e.g., entire range maps or convex-hull approaches) often focus on a single dimension of intrinsic risk; others rely on data-intensive models only applicable to a few well-studied species. What remains is a need for an approach that enables multispecies, multidimensional assessment efforts. This is particularly true at regional scales, where management needs require assessments that are intermediate to coarse- and fine-scale approaches. We demonstrate that by considering multiple dimensions of intrinsic risk to climate change (range size, climate sensitivity, and traits), site-specific locality data may offer a pathway for ensuring vulnerable, understudied species do not go overlooked in conservation.

Pacific Northwest↗

USGS2019

Effects of climate change on habitat and connectivity for populations of a vulnerable, endemic salamander in Iran

Habitat loss and fragmentation are among the biggest threats to amphibian populations and anthropogenic climate change may exacerbate these. The response of Iran's amphibians to climate change is uncertain and yet making an accurate prediction of how the species will respond is critical for conservation. We assessed how expected future climate scenarios before the years 2050 and 2070 might influence the geographic distribution and habitat connectivity of the Lorestan Mountain Newt (Neurergus kaiseri). We examined presence data (2010–2018) of the species according to environmental and anthropogenic factors, and created an ensemble model of habitat suitability based on eight species distribution models (SDMs). Then, we used the concept of circuit theory to estimate potential linkages between the habitat patches. We applied the ensemble calibrated models and quantified spatial connectivity to assess the influence of climate change on the species range for the years 2050 and 2070 under four representative concentration pathways (RCPs) of three general circulation models (GCMs). Models using current climate predicted that 6.8% of the 267,609 km2 study area has suitable conditions for the species, but only about 7% of these climatically suitable landscapes are covered by conservation areas. Temperature and precipitation-related climatic variables made the largest contribution to the distribution model. Under projected climate conditions, we found a decline of 56–98% of the suitable habitat and predicted a potential for distributional shifts towards higher elevations by 2050 and 2070. Although there is relatively good connectivity between many habitat patches today, models predict that suitable areas available to the newt will become increasingly fragmented under projected climate change scenarios. Our findings support the hypothesis that projected climatic shifts will negatively influence suitable habitats of amphibians and likely cause upward shifts in elevation in range of some species. Identifying potentially suitable habitats and important linkages between habitat patches under different climate scenarios are crucial steps in conservation planning for the Lorestan Mountain Newt.

Global Ecology and Conservation↗

USGS2019

Appropriate sample sizes for monitoring burned pastures in sagebrush steppe: How many plots are enough, and can one size fit all?

Statistically defensible information on vegetation conditions is needed to guide rangeland management decisions following disturbances such as wildfire, often for heterogeneous pastures. Here we evaluate the number of plots needed to make informed adaptive management decisions using >2000 plots sampled on the 2015 Soda Fire that burned across 75 pastures and 113,000 ha in Idaho and Oregon, USA. We predicted that the number of plots required to generate a threshold of standard error/mean ≤0.2 (TSR, threshold sampling requirement) for plant cover within pasture units would vary between sampling methods (rapid ocular versus grid-point intercept) and among plot sizes (1, 6, or 531 m2), as well as relative to topography, elevation, pasture size, complexity of soils and vegetation treatments applied, and dominance by exotic annual or perennial grasses. Sampling was adequate for determining exotic annual and perennial grass cover in about half of the pastures. A tradeoff in number versus size of plots sampled was apparent, whereby TSR was attainable with less area searched using smaller plot sizes (1 compared to 531 m2) in spite of less variability between larger plots. TSR for both grass types decreased as their dominance increased (0.5-1.5 plots per % cover increment). TSR decreased for perennial grass but increased for exotic annual grass with higher elevations. TSR increased with standard deviation of elevation for perennial grass sampled with grid-point intercept. Sampling effort could be more reliably predicted from landscape variables for the grid-point compared to ocular sampling method. These findings suggest that adjusting the number and size of sample plots within a pasture or burn area using easily determined landscape variables could increase monitoring efficiency and effectiveness.

Rangeland Ecology and Management↗

USGS2019

Modeling long-term effects of fuel treatments on fuel loads and fire regimes in the Great Basin

The principal motivation for this study is that sagebrush-steppe ecosystems are undergoing significant state changes, and land managers are challenged with optimizing their resources for both short- and long-term use. Yet, limited knowledge is available regarding how the sagebrush-steppe will respond to environmental changes related to precipitation and temperature regimes, and disturbance such as fire. Furthermore, there is a lack of understanding on how fuels reduction and other fuel management activities will impact these ecosystems over the long-term. We addressed these challenges by adapting and testing a vegetation dynamics model, the Ecosystem Demography v2.2 model (EDv2.2), for the sagebrush-steppe. Vegetation dynamics models can provide estimations of ecosystem productivity in their natural and disturbance states, and thus serve as a tool to understand and predict potential changes in various processes and properties of vegetation communities. Yet, there is no vegetation dynamics model that is well-developed for the sagebrush-steppe, and thus significant effort is needed to test EDv2.2 for its application. As part of our efforts to develop the EDv2.2 model into a useful tool for the sagebrush-steppe, we developed a sagebrush plant functional type (PFT) as part of this study, and then performed sensitivity analyses, model calibration, and finally model evaluation. Furthermore, we developed several model scenarios under natural (undisturbed) and disturbed (fire) environments. We compared our model outputs with ground-based data (field and eddy covariance) and remote sensing observations. The results of our project include a sagebrush PFT that can be used in both future EDv2.2 modeling efforts and other vegetation dynamic models. Our results from the model sensitivity analysis indicate that specific leaf area (SLA), stomatal slope (STO_S), cuticular conductance (CUT_C), and carboxylase rate constant (VM0) are sensitive parameters to vegetation productivity in the model (based on gross primary production, GPP), and future modeling efforts will benefit from both lab and field studies of these parameters and sensitivity analyses. Through calibration, we found that the EDv2.2 model estimates of GPP were modeled well at our lowest elevation field site in Reynolds Creek Experimental Watershed (RCEW), which is dominated by Wyoming big sagebrush. On the contrary, we found poorer results at higher elevation site shrub sites. These sites are characterized by either low sagebrush or mountain big sagebrush, and have more forb cover than the low elevation site. In this project we also implemented the fire model in EDv2.2 to explore how shrub and C3 grasses respond to fire by analyzing post-fire GPP. We ran both point and regional model runs with fire introduced. In most fire scenarios, fire substantially reduced shrub GPP and it took several decades for shrub GPP to return to pre-fire conditions. Grass GPP responded more quickly in post-fire conditions. While these processes are representative of what other studies have found, significant efforts to improve the fire processes in EDv2.2 are needed. For example, nuances associated with the fire subroutine in the model (running periodic fire events versus instantaneous fires and fire intensity) will need to be expanded. Another significant contribution to our knowledge gap is that additional PFTs to represent the sagebrush-steppe (e.g. annual grasses such cheatgrass) are needed for EDv2.2. Regardless, this project made significant advances in PFT development and model testing. Moreover, the EDv2.2 provides a useful framework to conceptualize vegetation dynamics, project future conditions, and consider fire as a disturbance. With additional parameterizations, PFTs, and fire routines, EDv2.2 will evolve as a tool for which to better understand future ecosystem dynamics of the sagebrush-steppe.

Idaho↗

USGS2018

Identification of bees in southwest Idaho—A guide for beginners

This document was prepared to help scientists and the public, both of whom may not be familiar with bee taxonomy, learn how to practically identify bees in sagebrush steppe and shrubland habitats in southwest Idaho. We provide information to identify bees to the level of family and genus. A tentative list of the bee genera captured at sites used for insect community studies is included.

Idaho↗

USGS2018

Insect communities in big sagebrush habitat are altered by wildfire and post‐fire restoration seeding

Natural resource managers sow grass, forb, and shrub seeds across millions of hectares of public lands in the western United States to restore sagebrush‐steppe ecosystems burned by wildfire. The effects of post‐fire vegetation treatments on insect communities in these ecosystems have not been investigated. We conducted the first investigation of insect community responses to post‐fire seeding on public rangelands by comparing the composition of insect communities at burned‐and‐seeded (treatment) and burned‐and‐unseeded (control) sagebrush‐steppe ecological sites in southwestern Idaho. Insect communities in burned areas were compared to unburned (reference) areas. Insect communities in burned plots did not resemble those in reference plots. Treatment plots had greater inter‐annual variability in insect community composition than control or reference plots, suggesting that communities may be less stable in seeded areas. The vegetation composition of the landscape surrounding plots influenced mobile species. Wildfire and post‐fire seeding may have lasting effects on insect communities in sagebrush‐steppe ecosystems. Wildfires decrease shrub cover. Post‐fire seeding increases perennial bunchgrasses and, where successful, reduces non‐native annual grasses. These habitat changes influence insect community composition. Future studies are needed to expand the inference of this study.

Insect Conservation and Diversity↗

USGS2018

Fuels guide and database for intact and invaded big sagebrush (Artemisia tridentata) ecological sites—User manual

The Fuels Guide and Database (FGD) is intended to provide fuel loading and vegetation information for big sagebrush ( Artemisia tridentata ) ecological sites in the Morley Nelson Snake River Birds of Prey National Conservation Area (hereinafter the NCA) in southern Idaho. Sagebrush ecosystems in the NCA and throughout much of the Great Basin are highly influenced by non-native plants that alter successional trajectories and promote frequent wildfires, especially due to fine-fuel loadings that are highly variable over time and space. These dynamic fuel conditions can increase uncertainty when attempting to project fire risk and fire behavior. The FGD was developed to help quantify and assess these dynamic fuel loadings, and it provides access to fuels data across a range of conditions, from relatively intact sagebrush-bunchgrass communities to degraded communities dominated by nonnative annual grasses and forbs. The FGD can be queried for a variety of environmental conditions, and it provides tabular data, reports, and photographic records of fuels based on user queries. This report describes the FGD, including overall data content and data-collection methods, as well as instructions for installing and using the database.

Data Series↗

USGS2018

Quantifying climate sensitivity and climate-driven change in North American amphibian communities

Changing climate will impact species’ ranges only when environmental variability directly impacts the demography of local populations. However, measurement of demographic responses to climate change has largely been limited to single species and locations. Here we show that amphibian communities are responsive to climatic variability, using >500,000 time-series observations for 81 species across 86 North American study areas. The effect of climate on local colonization and persistence probabilities varies among eco-regions and depends on local climate, species life-histories, and taxonomic classification. We found that local species richness is most sensitive to changes in water availability during breeding and changes in winter conditions. Based on the relationships we measure, recent changes in climate cannot explain why local species richness of North American amphibians has rapidly declined. However, changing climate does explain why some populations are declining faster than others. Our results provide important insights into how amphibians respond to climate and a general framework for measuring climate impacts on species richness.

Nature Communications↗