Geology topics

David O'Brien

Publications and source records attributed to David O'Brien.

9 recordsLinked to original sources

USGS2025

A survey of mammal and fish genetic diversity across the global protected area network

Global conservation targets aim to expand protected areas and maintain species’ genetic diversity. Whether protected areas capture genetic diversity is unclear. We examined this question using a global sample of nuclear population-level microsatellite data comprising genotypes from 2513 sites, 134,183 individuals, and 176 mammal and marine fish species. The genetic diversity and differentiation of samples inside and outside protected areas were similar, with some evidence for higher diversity in protected areas for small-bodied mammals. Mammal populations, particularly large species, tended to be more genetically diverse when near multiple protected areas, regardless of whether samples were collected in or outside protected areas. Older marine protected areas tended to capture more genetically diverse fish populations. However, limited data availability in many regions hinders the systematic incorporation of genetic diversity into protected area design. Focusing on minimizing population decline and maintaining connectivity between protected areas remain essential proxies for maintaining genetic diversity.

Conservation Letters↗

USGS2024

DNA-based studies and genetic diversity indicator assessments are complementary approaches to conserving evolutionary potential

Genetic diversity is essential for maintaining healthy populations and ecosystems. Several approaches have recently been developed to evaluate population genetic trends without necessarily collecting new genetic data. Such “genetic diversity indicators” enable rapid, large-scale evaluation across dozens to thousands of species. Empirical genetic studies, when available, provide detailed information that is important for management, such as estimates of gene flow, inbreeding, genetic erosion and adaptation. In this article, we argue that the development and advancement of genetic diversity indicators is a complementary approach to genetic studies in conservation biology, but not a substitute. Genetic diversity indicators and empirical genetic data can provide different information for conserving genetic diversity. Genetic diversity indicators enable affordable tracking, reporting, prioritization and communication, although, being proxies, do not provide comprehensive evaluation of the genetic status of a species. Conversely, genetic methods offer detailed analysis of the genetic status of a given species or population, although they remain challenging to implement for most species globally, given current capacity and resourcing. We conclude that indicators and genetic studies are both important for genetic conservation actions and recommend they be used in combination for conserving and monitoring genetic diversity.

Conservation Genetics↗

USGS2023

Genetic diversity goals and targets have improved, but remain insufficient for clear implementation of the post-2020 global biodiversity framework

Genetic diversity among and within populations of all species is necessary for people and nature to survive and thrive in a changing world. Over the past three years, commitments for conserving genetic diversity have become more ambitious and specific under the Convention on Biological Diversity’s (CBD) draft post-2020 global biodiversity framework (GBF). This Perspective article comments on how goals and targets of the GBF have evolved, the improvements that are still needed, lessons learned from this process, and connections between goals and targets and the actions and reporting that will be needed to maintain, protect, manage and monitor genetic diversity. It is possible and necessary that the GBF strives to maintain genetic diversity within and among populations of all species, to restore genetic connectivity, and to develop national genetic conservation strategies, and to report on these using proposed, feasible indicators.

Conservation Genetics↗

USGS2022

Global genetic diversity status and trends: Towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition

Biodiversity underlies ecosystem resilience, ecosystem function, sustainable economies, and human well-being. Understanding how biodiversity sustains ecosystems under anthropogenic stressors and global environmental change will require new ways of deriving and applying biodiversity data. A major challenge is that biodiversity data and knowledge are scattered, biased, collected with numerous methods, and stored in inconsistent ways. The Group on Earth Observations Biodiversity Observation Network (GEO BON) has developed the Essential Biodiversity Variables (EBVs) as fundamental metrics to help aggregate, harmonize, and interpret biodiversity observation data from diverse sources. Mapping and analyzing EBVs can help to evaluate how aspects of biodiversity are distributed geographically and how they change over time. EBVs are also intended to serve as inputs and validation to forecast the status and trends of biodiversity, and to support policy and decision making. Here, we assess the feasibility of implementing Genetic Composition EBVs (Genetic EBVs), which are metrics of within-species genetic variation. We review and bring together numerous areas of the field of genetics and evaluate how each contributes to global and regional genetic biodiversity monitoring with respect to theory, sampling logistics, metadata, archiving, data aggregation, modeling, and technological advances. We propose four Genetic EBVs: ( i ) Genetic Diversity; ( ii ) Genetic Differentiation; ( iii ) Inbreeding; and ( iv ) Effective Population Size ( N e ). We rank Genetic EBVs according to their relevance, sensitivity to change, generalizability, scalability, feasibility and data availability. We outline the workflow for generating genetic data underlying the Genetic EBVs, and review advances and needs in archiving genetic composition data and metadata. We discuss how Genetic EBVs can be operationalized by visualizing EBVs in space and time across species and by forecasting Genetic EBVs beyond current observations using various modeling approaches. Our review then explores challenges of aggregation, standardization, and costs of operationalizing the Genetic EBVs, as well as future directions and opportunities to maximize their uptake globally in research and policy. The collection, annotation, and availability of genetic data has made major advances in the past decade, each of which contributes to the practical and standardized framework for large-scale genetic observation reporting. Rapid advances in DNA sequencing technology present new opportunities, but also challenges for operationalizing Genetic EBVs for biodiversity monitoring regionally and globally. With these advances, genetic composition monitoring is starting to be integrated into global conservation policy, which can help support the foundation of all biodiversity and species' long-term persistence in the face of environmental change. We conclude with a summary of concrete steps for researchers and policy makers for advancing operationalization of Genetic EBVs. The technical and analytical foundations of Genetic EBVs are well developed, and conservation practitioners should anticipate their increasing application as efforts emerge to scale up genetic biodiversity monitoring regionally and globally.

Biological Reviews↗

USGS2021

Global commitments to conserving and monitoring genetic diversity are now necessary and feasible

Global conservation policy and action have largely neglected protecting and monitoring genetic diversity—one of the three main pillars of biodiversity. Genetic diversity (diversity within species) underlies species’ adaptation and survival, ecosystem resilience, and societal innovation. The low priority given to genetic diversity has largely been due to knowledge gaps in key areas, including the importance of genetic diversity and the trends in genetic diversity change; the perceived high expense and low availability and the scattered nature of genetic data; and complicated concepts and information that are inaccessible to policymakers. However, numerous recent advances in knowledge, technology, databases, practice, and capacity have now set the stage for better integration of genetic diversity in policy instruments and conservation efforts. We review these developments and explore how they can support improved consideration of genetic diversity in global conservation policy commitments and enable countries to monitor, report on, and take action to maintain or restore genetic diversity.

BioScience↗

USGS2021

Genetic diversity is considered important but interpreted narrowly in country reports to the Convention on Biological Diversity: Current actions and indicators are insufficient

International agreements such as the Convention on Biological Diversity (CBD) have committed to conserve, and sustainably and equitably use, biodiversity. The CBD is a vital instrument for global conservation because it guides 195 countries and the European Union in setting priorities and allocating resources, and requires regular reporting on progress. However, the CBD and similar policy agreements have often neglected genetic diversity. This is a critical gap because genetic diversity underlies adaptation to environmental change and ecosystem resilience. Here we aim to inform future policy, monitoring, and reporting efforts focused on limiting biodiversity loss by conducting the largest yet evaluation of how Parties to the CBD report on genetic diversity. A large, globally representative sample of 114 CBD National Reports was examined to assess reported actions, progress, values and indicators related to genetic diversity. Although the importance of genetic diversity is recognized by most Parties to the CBD, genetic diversity targets mainly addressed variation within crops and livestock (a small fraction of all species). Reported actions to conserve genetic diversity primarily concerned ex situ facilities and legislation, rather than monitoring and in situ intervention. The most commonly reported status indicators are not well correlated to maintaining genetic diversity. Lastly, few reports mentioned genetic monitoring using DNA data, indigenous use and knowledge of genetic diversity, or development of strategies to conserve genetic diversity. We make several recommendations for the post-2020 CBD Biodiversity Framework, and similar efforts such as IPBES, to improve awareness, assessment, and monitoring of genetic diversity, and facilitate consistent and complete reporting in the future.

Biological Conservation↗

USGS2020

Genetic diversity targets and indicators in the CBD post-2020 Global Biodiversity Framework must be improved

The 196 parties to the Convention on Biological Diversity (CBD) will soon agree to a post-2020 global framework for conserving the three elements of biodiversity (genetic, species, and ecosystem diversity) while ensuring sustainable development and benefit sharing. As the most significant global conservation policy mechanism, the new CBD framework has far-reaching consequences- it will guide conservation actions and reporting for each member country until 2050. In previous CBD strategies, as well as other major conservation policy mechanisms, targets and indicators for genetic diversity (variation at the DNA level within species, which facilitates species adaptation and ecosystem function) were undeveloped and focused on species of agricultural relevance. We assert that, to meet global conservation goals, genetic diversity within all species, not just domesticated species and their wild relatives, must be conserved and monitored using appropriate metrics . Building on suggestions in a recent Letter in Science (Laikre et al., 2020) we expand argumentation for three new, pragmatic genetic indicators and modifications to two current indicators for maintaining genetic diversity and adaptive capacity of all species, and provide guidance on their practical use. The indicators are: 1) the number of populations with effective population size above versus below 500, 2) the proportion of populations maintained within species, 3) the number of species and populations in which genetic diversity is monitored using DNA-based methods. We also present and discuss Goals and Action Targets for post-2020 biodiversity conservation which are connected to these indicators and underlying data. These pragmatic indicators and goals have utility beyond the CBD; they should benefit conservation and monitoring of genetic diversity via national and global policy for decades to come.

Biological Conservation↗

USGS2020

Proposed species extinction target fails to capture the diversity in biodiversity

We believe the 20 species extinction metric is a retrograde proposal, which does not adequately consider the lessons learnt from the 2020 Aichi Biodiversity Targets. Whilst having a single simple overarching target is appealing, we believe a positively-framed target will garner support, rather than one that aims to, at best, limit negative impacts. The Convention on Biological Diversity’s zero draft states that future targets should be clear, consistent and SMART (Specific, Measurable, Achievable, Relevant and Timely). Extinction is problematic as a standalone target: it can take decades to demonstrate and therefore cannot be measured over a relevant time-period, and is biased towards terrestrial vertebrates. The proposal is not scalable across nations, nor is it equitable,one of the key aspirations of the zero draft. Many industrialised countries are unlikely to find the targets challenging because their most vulnerable species have largely gone extinct; tropical species-rich countries, where much biodiversity is yet to be catalogued, will find the targets demanding and unachievable in the short- or medium-term. Despite the authors’ statement to the contrary, species extinction is not necessarily relevant to other aspects of biodiversity, such as ecosystems or genetic diversity. A species may be reduced to a small fraction of its former extent without going extinct. However, its ecosystem will be altered, and its contribution to ecosystem functions and the socio-economic benefits it provided will be lost. The focus on extinction is not novel and has not been particularly successful to date, as demonstrated by the decline of emblematic species such as rhinoceroses. Alternatively, composite indicators can be used to capture biodiversity’s three fundamental components (ecosystems, species and genetic diversity). In conclusion, we cannot support a target that fails to represent the diversity in biodiversity and, in the authors’ words, could be met despite “wholesale and damaging changes to life on Earth.”

Science↗

USGS2017

Geomorphological evidence for ground ice on dwarf planet Ceres

Five decades of observations of Ceres suggest that the dwarf planet has a composition similar to carbonaceous meteorites and may have an ice-rich outer shell protected by a silicate layer. NASA’s Dawn spacecraft has detected ubiquitous clays, carbonates and other products of aqueous alteration across the surface of Ceres, but surprisingly it has directly observed water ice in only a few areas. Here we use Dawn Framing Camera observations to analyse lobate morphologies on Ceres’ surface and we infer the presence of ice in the upper few kilometres of Ceres. We identify three distinct lobate morphologies that we interpret as surface flows: thick tongue-shaped, furrowed flows on steep slopes; thin, spatulate flows on shallow slopes; and cuspate sheeted flows that appear fluidized. The shapes and aspect ratios of these flows are different from those of dry landslides—including those on ice-poor Vesta—but are morphologically similar to ice-rich flows on other bodies, indicating the involvement of ice. Based on the geomorphology and poleward increase in prevalence of these flows, we suggest that the shallow subsurface of Ceres is comprised of mixtures of silicates and ice, and that ice is most abundant near the poles.

Nature Geoscience↗