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David Beauchamp

Publications and source records attributed to David Beauchamp.

At least 19 recordsLinked to original sources

DRIFteRS: A dataset of drift invertebrate densities in streams and rivers across western North America, 1997–2024

Prey availability is among the most influential and highly variable determinants of fish growth and freshwater habitat carrying capacity, yet it remains understudied compared to physical habitat variables (Ouellet et al., 2025; Rosenfeld et al., 2014; Weber et al., 2017). We often lack a clear understanding of how much food is available to fishes, how it varies spatially and temporally, and how it influences responses to restoration (Ouellet et al., 2025; Rossi et al., 2024; Wipfli et al., 2010). Drift invertebrates—the primary food source for juvenile salmonids and other drift-foraging fishes—play a pivotal role in these dynamics. To better understand the spatiotemporal variability of drift invertebrate abundance and biomass across the freshwater range of drift-feeding salmonids in western North America, we compiled the DRift Invertebrates For salmonids in River Systems (DRIFteRS) dataset. The dataset encompasses 6125 samples of drift invertebrates, and, for a subset of drift samples, associated benthic invertebrate density data, collected from 1360 reaches on 459 unique rivers and streams spanning 55 river basins considered hydrologically independent (i.e., not nested within the same larger watershed) across British Columbia, Canada, and the U.S. states of Alaska, Arizona, California, Colorado, Idaho, Nevada, New Mexico, Oregon, Utah, Washington, and Wyoming. Sample sites represent a diverse array of river and stream habitats (e.g., headwater, mainstem, side channel), in watersheds with diverse land uses (e.g., urban, wilderness, agricultural), and disturbance histories (e.g., fire, restoration). Collected between 1997 and 2024, the data span the full calendar year and capture daily and seasonal patterns in drift abundance and biomass densities. When paired with water quality and quantity data as well as remotely sensed environmental landscape data, such as land use/land cover, climate, and disturbance history, channel morphology, and riparian vegetation composition, the DRIFteRS dataset can aid in identifying key drivers of drift invertebrate densities and mean body size and support predictive modeling in unsampled locations and times. The dataset may also be used to analyze aquatic-terrestrial resource flows, derive prey-encounter rates and profitability (mean prey size), and inform broader investigations of sit-and-wait foraging ecology, especially when paired with data on drift-foraging predators. For salmonid-focused applications, the dataset can be integrated into habitat evaluation models, including bioenergetic (e.g., Naman et al., 2019) and life cycle models (e.g., Beechie et al., 2023), to improve estimates of habitat capacity and population dynamics for river- and stream-rearing salmonids. Understanding prey availability dynamics is increasingly important, because rising water temperatures increase salmonid metabolic demands (Crozier et al., 2010). Flow regime transitions (i.e., snow or glacier dominated to rain dominated; Beechie et al., 2013), wildfire frequency and intensity (Hessburg et al., 2021), as well as plant community and phenology shifts (Cleland et al., 2007; Franklin et al., 2016) are all predicted to change with rising temperatures and are potential drivers of terrestrial and aquatic invertebrate prey quality and availability in lotic systems. These insights can ultimately inform restoration prioritization and design, helping managers consider food resource implications when evaluating restoration priorities and match habitat improvement to food supply. The data are released under the Creative Commons Attribution 4.0 International license and may be reused with attribution.

Alaska, Arizona, British Columbia, California, Col

Food for fish: Challenges and opportunities for quantifying foodscapes in river networks

Riverine fishes face many challenges including habitat degradation and climate change, which alter the productivity of the riverscapes in which fish live, reproduce, and feed. Understanding the watershed portfolio of foraging and growth opportunities that sustain productive and resilient fish populations is important for prioritizing conservation and restoration. However, the spatiotemporal distribution and availability of fish food are poorly understood relative to other factors such as abiotic habitat quantity and quality (e.g., water temperature). In this paper, we build on the concept of “foodscapes,” and describe three components of food for fish, including abundance, accessibility, and quality. We then discuss methodological advances to help address three key questions: (1) Why is food availability hard to estimate? (2) What are the consequences of uncertainty in food availability estimates? and (3) What approaches are available or emerging for quantifying food available to fish? To address the first question, we characterize data acquisition and analytical challenges; for the second, we demonstrate the importance of evaluating and communicating potential consequences of uncertainty; and for the third, we posit opportunities for future work. Collectively, we highlight the need for greater appreciation of the role food plays in stream fish conservation, especially given its critical influence on responses to warming temperatures.

WIREs Water

Change in growth and prey utilization for a native salmonid following invasion by an omnivorous minnow in an oligotrophic reservoir

Aquatic invasive species can affect food web structure, native fish growth, and production, depending on the traits of the invasive species and the pre-invasion conditions of the ecosystem. Thermal tolerances and behavioral traits can further influence differential exploitation of resources shared between native and invasive species. An unauthorized introduction of redside shiner ( Richardsonius balteatus ) into reservoirs in the Upper Skagit River, Washington, USA caused concern of potential competition, decreased production, and recruitment of rainbow trout ( Oncorhynchus mykiss ). We combined bioenergetics modeling and stable isotope analysis with field data to quantify consumption demand of native and invasive fishes and related consumption to the availability of key zooplankton prey. Per capita consumption on Daphnia by redside shiner was low; however, their high abundance imposed considerable demand on prey resources in Ross Lake. Although monthly consumption demand by the fish community was less than 50% of the monthly production and biomass of Daphnia in Ross Lake, the current Daphnia densities and growth of rainbow trout were considerably lower than before the invasion. These reductions correspond to lower annual consumption of Daphnia . Our study provides insight on mechanisms that influence food web impacts of an invasive omnivore in cold-water reservoirs.

Washington

Prey supply and predation as potential limitations to feasibility of anadromous salmonid introductions in a reservoir

Introducing anadromous fish upstream of migration barriers has frequently been proposed as a conservation strategy, but existing conditions and future changes to the ecosystems above barriers such as invasive species, climate change, and varying water operations influence the capacity to support such introductions. In the Upper Skagit River, Washington, USA, introduction of anadromous salmonids above three high-head dams was proposed; however, the proliferation of invasive redside shiner Richardsonius balteatus fundamentally altered reservoir food web interactions, presenting potential challenges for the growth and production of introduced anadromous salmonids. By combining empirical measurements of zooplankton availability and temporal patterns in thermal structure of the reservoir with bioenergetics model simulations to quantify the rearing capacity of Ross Lake, we estimated the lake could support millions of sockeye salmon fry entering in spring after accounting for temporal consumption demand by the existing planktivore community dominated by redside shiner. The initial fry estimates varied according to the expected fry-to-smolt survival rate, and whether salmonids would be thermally restricted from prey in the epilimnion. This translated to estimates of 189,000 to 285,000 smolts leaving the following spring, and 7700 to 11,700 returning adults, using mean fry-to-smolt and smolt-to-adult survival rates from a nearby sockeye salmon population. We also estimated that predation potential could pose substantial mortality for lake-rearing sockeye or Chinook salmon, although it is expected to play a lesser role in limiting survival of species that only migrate through the reservoir. These results provide a case study and framework for examining bottom-up and top-down food web processes that influence growth and survival of introduced anadromous salmonids in reservoir habitats, thus guiding the direction of future feasibility studies in Ross Lake and other regulated rivers where introduction programs are considered.

Washington

Shift in piscivory by salmonids following invasion of a minnow in an oligotrophic reservoir

Predation can play an important role in structuring ecological communities, and predator–prey dynamics can be altered following the introduction of new species. An unauthorized introduction of redside shiner ( Richardsonius balteatus ) into reservoirs in the Upper Skagit River, Washington, USA created concern that a consequent shift in predator–prey dynamics in the reservoirs could reduce recruitment and production of native salmonids in the basin. We estimated predation mortality in Ross Lake on nonnative redside shiner and juvenile native salmonids to evaluate the potential role of predation in regulating these populations and limiting survival of native species of concern. We used bioenergetics modelling and stable isotope analysis combined with directed field measurements of growth, seasonal diet and thermal experience of piscivorous salmonids to quantify their consumption demand on prey fishes to evaluate the relative magnitude of predation mortality on invasive redside shiners and native salmonids. While redside shiner are the dominant prey fish species in Ross Lake, the modest biomass of native salmonids consumed could translate into substantial mortality, the magnitude of which depended on the timing and size at which prey fishes were eaten. This information provides important context for how nonnative species may indirectly impact native species through shared predation (apparent competition) and can inform conservation decisions surrounding nonnative species control, sustainability of native salmonids and introductions of anadromous fishes.

Ecology of Freshwater Fish

Annual and inter-annual variability in the diffuse attenuation coefficient and turbidity in an urbanized Washington lake from 2013 to 2022 assessed using Landsat-8/9

Water clarity, defined in this study using measurements of the downwelling diffuse light attenuation coefficient (K d ) and turbidity, is an important indicator of lake trophic status and ecosystem health. We used in-situ measurements to evaluate existing semi-analytical models for K d and turbidity, developed a regional turbidity model based on spectral shape, and evaluated the spatial and temporal trends in Lake Washington from 2013 to 2022 using Landsat-8/9 Operational Land Imager (OLI). We found no significant trends from 2013 to 2022 in K d or turbidity when both the annual and full datasets were considered. In addition to the spring peak lasting from April through June, autumn K d peaks were present at all sites, a pattern consistent with seasonal chlorophyll a and zooplankton concentrations. There existed no autumn peak in the monthly turbidity dataset, and the spring peak occurred two months before the K d peak, nearly mirroring seasonal variability in the Cedar River discharge rates over the same period. The K d and turbidity algorithms were thus each more sensitive to different sources of water clarity variability in Lake Washington.

Washington

Growth performance of Rainbow Trout in reservoir tributaries and implications for steelhead growth potential above Skagit River dams

Objective In the Pacific Northwest (USA), Pacific salmon Oncorhynchus spp. populations have been declining significantly for decades, prompting stakeholders to respond with a variety of conservation and restoration measures. One such measure being considered in the Skagit River basin (Washington, USA) is the introduction of steelhead Oncorhynchus mykiss (anadromous Rainbow Trout) above the impassable Gorge, Diablo, and Ross dams to bolster their populations. Because freshwater growth is key to survival at subsequent life stages, we evaluated current trends in size and growth of Rainbow Trout among key tributaries to Gorge, Diablo, and Ross reservoirs using empirical data collection and bioenergetics modeling. Methods For nine candidate streams, a bioenergetics model was used to assess how temperature and prey consumption affected growth performance of Rainbow Trout between annuli 1 and 2, and 2 and 3. Thermal scenarios were created to evaluate how fish growth responded to temperature variability while total annual consumption was constrained within empirical growth estimates. We then compared these results to back-calculated size thresholds established by size-at-age observed in wild steelhead adults that returned to the Skagit River below the dams. Result Of the streams proposed for introductions, there was one instance (McMillan Creek) in the nominal simulations where growth met or exceeded the size at annulus 2 or 3 of a returning adult steelhead (24.9 g at annulus 2 and 50.3 g at annulus 3). Modeled growth under different thermal scenarios showed that colder temperatures (0.1–10.7°C, Canyon Creek) produced higher growth than under the nominal or warm scenarios (2.0–15.3°C, Canyon Creek), as well as one additional tributary where size at annulus 2 or 3 (±2 SE) was comparable to the threshold established by adult steelhead below the dams (Big Beaver Creek, annulus 3). Conclusion These results suggest Rainbow Trout growth is most limited by prey availability in the examined upper Skagit tributaries.

Washington

Seasonal shifts in diel vertical migrations by lake-dwelling coastal cutthroat trout, Oncorhynchus clarkii clarkii, reflect thermal regimes and prey distributions

Lakes provide important habitat for salmonids that may use them as a primary feeding area between periods of reproduction. The seasonal changes in vertical thermal structure in lakes can affect the distribution of salmonids on seasonal and diel time scales as they search for, consume, and digest prey that also exploits the water column's distribution of food, temperature and light. Our goal was to analyse the vertical distribution of wild, native coastal cutthroat trout ( Oncorhynchus clarkii clarkii ) in Lake Washington on daily and seasonal time scales. This lake is stratified in the summer and isothermal in winter, allowing us to compare vertical movements between periods with and without thermal structure in water 50 m deep. We predicted that trout would be deeper in the water column during stratified months and shallower during isothermal months, and shallower at night than in the day. Overall, the trout showed these patterns in the depths and temperatures they occupied, tending to be within or below the thermocline in the summer but not in the coolest water available, and closer to the surface when the lake was isothermal. The trout were also closer to the surface at night and deeper during the day. The vertical range of these diel movements shifted with the seasons–deepest in October, as the thermocline deepened and weakened, and shallowest in January when the lake was isothermal. These seasonal and diel vertical distribution patterns by the trout optimise metabolism for growth, and facilitate feeding on planktivorous fishes that also show seasonal and diel vertical distribution changes.

Washington

Pelagic food web interactions in a large invaded ecosystem: Implications for reintroducing a native top predator

A series of species introductions, overexploitation, and habitat modification preceded the extirpation of Lahontan cutthroat trout ( Oncorhynchus clarkii henshawi; LCT), historically the apex predator, from Lake Tahoe, California-Nevada, USA. Studies evaluating limiting factors for LCT emphasise the need to elucidate food web interactions, yet important knowledge gaps regarding trophic interactions among nonnative pelagic fishes and invertebrates remain. We quantified the abundance and consumption demand of planktivores with an emphasis on kokanee ( Oncorhynchus nerka ) and Mysis diluviana . We synthesised this new information with existing information for lake trout ( Salvelinus namaycush ). The seasonal supply of copepods satisfied the consumption demand of kokanee, but only supported low feeding and growth rates. Kokanee relied heavily on Mysis as prey, an unusual result. Mysis exhibited a high degree of herbivory initially followed by heavier consumption on copepods by larger individuals. Consumption demand for Mysis on copepods exceeded that of kokanee during all seasons. Mysis contributed to over 50% of the annual energy budget for lake trout up to 625 mm. Consumption of Mysis by lake trout and kokanee represented a significant source of mortality when compared to the production of Mysis . Predation on kokanee was sustainable, only involved lake trout >625 mm, and was focused on prespawning aggregations. Despite the presence of Mysis -fueled lake trout, kokanee have persisted; a noteworthy pattern when considering the negative responses of kokanee to nonnative lake trout and Mysis observed elsewhere. This pattern suggests that there may still be an effective niche for LCT in the invaded Lake Tahoe ecosystem.

California, Nevada

Bioenergetics model for the nonnative Redside Shiner

Objective Redside Shiner Richardsonius balteatus has expanded from its native range in the Pacific Northwest region of North America to establish populations in six other western states. This expansion has fueled concerns regarding competition between Redside Shiner and native species, including salmonids. We developed a bioenergetic model for Redside Shiner, providing a powerful tool to quantify its trophic role in invaded ecosystems and evaluate potential impacts on native species. Methods Mass- and temperature-dependent functions for consumption and respiration were fit based on controlled laboratory experiments of maximum consumption rates and routine metabolic rates using intermittent-flow respirometry, across a range of fish sizes (0.6–27.3 g) and temperatures (5–31°C). Laboratory growth experiments were conducted to corroborate model performance across different temperatures and feeding rates. Result Initial bioenergetic simulations of long-term growth experiments indicated large model error for predicted consumption and growth, and deviations from observed responses varied systematically as a function of daily consumption rate (J·g −1 ·d −1 ) and water temperature. A growth rate error correction function was developed and included in the bioenergetics model framework on a daily time step, resulting in decreased absolute model error in all experimental groups. Predicted values from the corrected model were highly correlated with observed values (�2; consumption = 0.97, final weight = 0.99) and unbiased. These results show that the optimal temperature for Redside Shiner growth (18°C) exceeds that of Pacific salmon Oncorhynchus spp. by 2–6°C under a scenario of high food availability and moderate food quality. Conclusion Consequently, increases in water temperature associated with climate change may favor growth and expansion of Redside Shiner populations, while negatively affecting some salmonids. The bioenergetics model presented here provides the necessary first step in quantifying trophic impacts in sensitive ecosystems where Redside Shiner have invaded or in ecosystems where anadromous salmonid reintroductions are being considered.

Transactions of the American Fisheries Society

Life-cycle model reveals sensitive life stages and evaluates recovery options for a dwindling Pacific salmon population

Population models, using empirical survival rates estimates for different life stages, can help managers explore whether various management options could stabilize a declining population or restore it to former levels of abundance. Here we used two decades of data on five life stages of the Cedar River, USA Sockeye Salmon, Oncorhynchus nerka , population to create and parameterize a life-cycle model. This formerly large but unproductive population is now in steep decline, despite hatchery enhancement. We gathered population-specific data on survival during five stages: 1) egg-to-fry, 2) fry-to-presmolt, 3) presmolt-to-adult return from the ocean, 4) adult en route from the ocean to the spawning grounds, and 5) reproduction. We ground-truthed the model to ensure its fit to the data, and then we modified survival and other parameters during various stages to examine future scenarios. Our analyses revealed that low survival of juveniles in Lake Washington (stage 2: averaging only 3% over the last 20 years), survival of adults returning to fresh water to spawn (stage 4), and survival of adults on spawning grounds to reproduce (stage 5) are likely limiting factors. Combined increases in these stages and others (specifically, the proportion of fish taken into the hatchery to be spawned) might also recover the population. As in other integrated hatchery populations, managers must weigh options relating to balancing the fraction of natural- and hatchery-origin fish, and our results showed that increasing the fraction of fish taken into the hatchery alone will not recover the population. Our model brings together population-specific data to help managers weigh conservation strategies and understand which stages and habitats are most limiting and how much survival must increase to achieve recovery targets. By extension, our analyses also reveal the utility of such models in other cases where stage-specific data are available.

North American Journal of Fisheries Management

Physiological and nutritional constraints on zooplankton productivity due to eutrophication and climate change predicted using a resource-based modeling approach

Emerging evidence suggests that zooplankton production is affected by physiological and nutritional constraints due to climate change and eutrophication, which in turn could have broad implications for food-web dynamics and fisheries production. In this study, we developed a resource-based zooplankton production dynamics model that causally links freshwater cladoceran and copepod daily production-to-biomass (P/B) ratios with water temperature, phytoplankton biomass and community composition, and zooplankton feeding selectivity. This model was used to evaluate constraints on zooplankton growth under four hypothetical scenarios: involving natural plankton community seasonal succession; lake fertilization to enhance fisheries production; eutrophication; and climatic warming. Our novel modeling approach predicts zooplankton production is strongly dependent on seasonal variation in resource availability and quality, which results in more complex zooplankton dynamics than predicted by simpler temperature dependent models. For mesotrophic and hypereutrophic lakes, our study suggests that the ultimate control over zooplankton P/B ratios shifts from physiological control during colder periods to strong resource control during warmer periods. Our resource-based model provided important insights into the nature of biophysical control of zooplankton under a changing climate that has crucial implications for food web energy transfer and fisheries production.

Canadian Journal of Fisheries and Aquatic Sciences

Resource use among top-level piscivores in a temperate reservoir: Implications for a threatened coldwater specialist

Evaluations of resource use among native piscivores in natural lakes have consistently documented significant partitioning that supports coexistence. Partitioning may be less prominent in reservoirs where water-level fluctuations can compress habitat and trophic diversity, but studies are lacking. Stable isotopes and bioenergetic models were used to quantify trophic interactions within a native piscivore assemblage inhabiting a temperate irrigation reservoir and explore implications for coexistence with a focus on threatened bull trout ( Salvelinus confluentus ). As hypothesised, adult bull trout exhibited the greatest degree of trophic specialisation by consuming mostly coldwater pelagic forage fish, which were consumed seasonally by the more abundant burbot ( Lota lota ) and northern pikeminnow ( Ptychocheilus oregonensis ). Numerous trophic niche overlap probabilities exceeded 70%, were as high as 93% and greatest between bull trout and burbot. Bioenergetics simulations demonstrated the high seasonal consumption capacity of burbot relative to northern pikeminnow. As a result, threefold to fourfold fewer burbot were required to consume the annual productivity of coldwater prey important for bull trout, particularly in the absence of small-bodied mesothermic or eurythermal fish as a buffer. Collectively, our analysis elucidated relatively strong trophic niche overlap among similarly sized piscivores, the importance of maintaining a diverse forage fish community for promoting coexistence and the greatest potential for competitive interactions between adult bull trout and burbot if key prey were limited or less diverse. More studies in regulated systems are needed to test for consistent patterns and identify mechanisms that limit or promote coexistence amid growing human-induced environmental change and demands on freshwater.

Washington

A climate-mediated shift in the estuarine habitat mosaic limits prey availability and reduces nursery quality for juvenile salmon

The estuarine habitat mosaic supports the reproduction, growth, and survival of resident and migratory fish species by providing a diverse portfolio of unique habitats with varying physical and biological features. Global climate change is expected to result in increasing temperatures, rising sea levels, and changes in riverine hydrology, which will have profound effects on the extent and composition of the estuarine habitat mosaic and its associated nursery quality for juvenile fish. We used a spatially explicit bioenergetics model to assess how different climate change scenarios might affect juvenile salmon growth rate potential relative to present day conditions in the Nisqually River Delta, WA, USA. The model indicated that prey-rich habitats such as emergent salt marshes and eelgrass meadows were most likely to facilitate growth, and that reductions in their areal extent and accessibility could have severe consequences for salmon. For instance, unmitigated sea-level rise halved the predicted extent of low- and high-elevation emergent salt marsh, leading to a 30% reduction in end-of-season weights. Increasing water temperatures compounded these effects during the late spring and summer such that the average daily growth rate of an individual fish decreased by an additional 5–50% when compared to the effects of sea-level rise alone. Lethal temperatures (> 24 °C) were infrequently observed, but they were more likely to occur during summer low tides in the mudflat and eelgrass habitats when accessibility to prey-rich marsh was minimal, thereby limiting foraging capacity and the availability of thermal refugia. Our findings indicate that, barring the enactment of targeted management strategies, rising tidal levels and increasing ocean temperatures may reduce the quality of the estuarine habitat mosaic for out-migrating salmon and other sensitive fish species.

Washington

Taxonomic, temporal, and spatial variations in zooplankton fatty acid composition in Puget Sound, WA, USA

Fatty acid (FA) content and composition of zooplankton in Puget Sound, Washington (USA) was studied to investigate the nutritional quality of diverse zooplankton prey for juvenile salmon ( Oncorhynchus spp.) in terms of their essential fatty acid (EFA) content. The study focus was on eicosapentaenoic acid (EPA), docosahexaenoic acid (DHA), and arachidonic acid (ARA) as these are key FA needed to maintain growth and development of juvenile fish. The different zooplankton taxa varied in their FA composition. Much of the variation in FA composition was driven by 18:1ω9 (a biomarker of carnivory), ARA, DHA, and FA characteristic of diatoms, which are linked to zooplankton diet sources. Gammarid and hyperiid amphipods contained the highest amount of EFA, particularly the gammarid amphipod Cyphocaris challengeri , while shrimp and copepods had much lower EFA content. Crab larvae, which are important prey for juvenile salmon in Puget Sound, had intermediate EPA + DHA content and the lowest DHA/EPA ratio, and were rich in diatom biomarkers. Temporal and spatial trends in zooplankton lipids were less apparent than the taxonomic differences, although the EFA content increased from spring to summer in Cancridae zoeae and the amphipod C. challengeri . These results on taxon-specific EFA content provide baseline information on the nutritional quality of zooplankton that can be applied in food web models. Combining zooplankton fatty acid data (quality) with taxon-specific zooplankton biomass data (quantity) enables development of new, sensitive indicators of juvenile fish production to help assess recent declines in salmon production in the Pacific Northwest and predict future adult returns.

Washington

Artificial lights with different spectra do not alter detrimental attraction of young Chinook salmon and sockeye salmon along lake shorelines

Artificial light at night (ALAN) is common in lakes with developed shorelines, especially prevalent in the nearshore areas where juvenile fishes, including salmonids, are present. One concern is that fishes may be attracted to ALAN and become more vulnerable to predators. The use of longer wavelength lights has been suggested to reduce the effects of ALAN; however, the response in juvenile salmonids is not well known. We tested the hypothesis that longer wavelength lights would attract fewer subyearling Chinook salmon ( Oncorhynchus tshawytscha ) and sockeye salmon ( O. nerka ) than shorter wavelength lights. Test lights included 4 LED lights, an incandescent light, and a high-pressure sodium light (HPS). In total, 13 experimental trials were conducted in 2017 and 2018, and in total 1769 Chinook salmon and 870 sockeye salmon were collected with beach seines. The mean catch rate (number per beach seine set) of subyearling salmonids was 51.0 for lighted treatments but only 6.6 for control treatments (no light). In both years, we did not find any significant difference in catch rates for either species between either of the longer wavelength lights (red-filter and yellow-filter LED lights) and other lights, and thus we rejected the hypothesis that longer wavelength light would attract fewer subyearling salmonids. For these early life stages of salmon in shallow shoreline habitats, reducing the intensity of light present is likely more important than altering the spectral composition when trying to minimize maladaptive attraction to ALAN.

Washington

Merging empirical and mechanistic approaches to modeling aquatic visual foraging using a generalizable visual reaction distance model

Visual encounter distance models are important tools for predicting how light and water clarity mediate visual predator-prey interactions that affect the structure and function of aquatic ecosystems at multiple spatial, temporal, and organizational scales. The two main varieties of visual encounter distance models, mechanistic and empirical, are used for similar purposes but take fundamentally different approaches to model development and have different strengths and weaknesses in terms of predictive accuracy, physical and biological interpretability of parameters, ability to incorporate outside information, and utility for knowledge transfer. To overcome weaknesses of existing mechanistic and empirical models and bridge the gap between approaches, we developed a generalized visual reaction distance model that relaxes assumptions of a widely-used mechanistic model that are violated in real predator-prey interactions. We compared the performance of the generalized visual reaction distance model to a widely used mechanistic model and an empirical visual encounter distance model by fitting models to data from four predator-prey experiments. The generalized visual reaction distance model substantially outperformed the other models in all cases based on fit to reaction distance data and presents an attractive alternative to prior models based on comparatively high predictive accuracy, use of interpretable parameters, and ability to incorporate outside information—characteristics that facilitate knowledge transfer.

Ecological Modelling

Using bottom trawls to monitor subsurface water clarity in marine ecosystems

Biophysical processes that affect subsurface water clarity play a key role in ecosystem function. However, subsurface water clarity is poorly monitored in marine ecosystems because doing so requires in-situ sampling that is logistically difficult to conduct and sustain. Novel solutions are thus needed to improve monitoring of subsurface water clarity. To that end, we developed a sampling method and data processing algorithm that enable the use of bottom trawl fishing gear as a platform for conducting subsurface water clarity monitoring using trawl-mounted irradiance sensors without disruption to fishing operations. The algorithm applies quality control checks to irradiance measurements and calculates the downwelling diffuse attenuation coefficient, K d , and optical depth, ζ – apparent optical properties (AOPs) that characterize the rate of decrease in downwelling irradiance and relative irradiance transmission to depth, respectively. We applied our algorithm to irradiance measurements, obtained using bottom-trawl-mounted archival tags equipped with a photodiode collected during NOAA’s Alaska Fisheries Science Center annual summer bottom trawl surveys of the eastern Bering Sea continental shelf from 2004 to 2018. We validated our AOPs by quantitatively comparing surface-weighted K d from tags to the multi-sensor K d (490) product from the Ocean Colour Climate Change Initiative project (OC-CCI) and qualitatively evaluating whether tag K d was consistent with patterns of subsurface chlorophyll-a concentrations predicted by a coupled regional physical-biological model (Bering10K-BESTNPZ). We additionally examined patterns and trends in water clarity in the eastern Bering Sea. Key findings are: 1) water clarity decreased significantly from 2004 to 2018; 2) a recurrent, pycnocline-associated, maximum in K d occurred over much of the northwestern shelf, putatively due to a subsurface chlorophyll maximum; and 3) a turbid bottom layer (nepheloid layer) was present over a large portion of the eastern Bering Sea shelf. Our study demonstrates that bottom trawls can provide a useful platform for monitoring water clarity, especially when trawling is conducted as part of a systematic stock assessment survey.

Alaska