Geology topics

Cory T. Overton

Publications and source records attributed to Cory T. Overton.

At least 37 records · Page 2Linked to original sources

USGS2022

Yuma Ridgway’s rail selenium exposure and occupancy within managed and unmanaged emergent marshes at the Salton Sea

Yuma Ridgway’s rail ( Rallus obsoletus yumanensis , hereafter, rail) is an endangered species for which patches of emergent marsh within the Salton Sea watershed comprise a substantial part of habitat for the species’ disjointed range in the southwestern United States. These areas of emergent marsh include (1) marshes managed by federal (particularly the U.S. Fish and Wildlife Service’s Sonny Bono Salton Sea National Wildlife Refuge), state (California Department of Fish and Wildlife), and local (Imperial Irrigation District) resource agencies that are sustained by direct deliveries of Colorado River water and (2) unmanaged marshes sustained by agricultural drainage water. Management of rail habitat in this arid environment is complicated by increasingly limited availability of unimpaired freshwater owing to water management decisions associated with the Quantification Settlement Agreement and risks posed by potentially harmful concentrations of selenium found in agricultural drainage water that can readily bioaccumulate in aquatic food webs. To provide timely science for managers, herein we report summary statistics for managed and unmanaged emergent marshes sampled at the Salton Sea during the rail breeding season of 2016 pertaining to (1) selenium concentrations in food webs representing dietary pathways of selenium exposure and (2) patterns of rail occupancy and inter-marsh movements, estimated abundance, and regional population size of rail. For selenium-specific objectives, we sampled unfiltered surface water, midge larvae (Chironomidae), water boatmen (Corixidae), mosquitofish ( Gambusia spp.), and crayfish (Astacidae). Selenium samples were collected from 15 fixed sampling points, each in managed and unmanaged marshes, during late February, April, and June 2016, which corresponded to rail pre-nesting, nesting, and fledgling reproductive life-stages, respectively. Two areas within the two treatment types (managed versus unmanaged marsh) were of particular interest to help assess risks associated with changing sea dynamics and different water-management strategies: (1) a large unmanaged marsh (Morton Bay) unintentionally created in approximately 2008 when it became separated from the Salton Sea as water inflows began to drop and a berm formed from accumulated sediment and (2) a restored marsh (HZ9A) managed by the Sonny Bono Salton Sea National Wildlife Refuge, which is currently supplied with Colorado River water but may be sustained in the future by a blend of clean (that is, low selenium) Colorado River and agricultural drainage water with higher selenium from the Alamo River. Hence, baseline data for these marshes are important for future management decisions. We also report selenium concentrations in rail blood, head feathers, and breast feathers from rails captured as part of the movement study. Results indicated relatively higher risks from dietary selenium exposure for rails occupying unmanaged marshes compared to managed marshes and similar risks among unmanaged marshes. However, risks also were potentially elevated for rails occupying some managed marshes (that is, the Hazard Marshes), where relatively high proportions of Chironomidae and mosquitofish exceeded dietary thresholds for selenium effects on avian reproduction. For rail-specific objectives, we quantified occupancy and spatial distribution using call count data analyzed with imperfect detection models. Imperfect detection models allowed us to jointly estimate detection probability and abundance of detected rails in association with habitats. We then used estimates of detection probability and abundance at the habitat level to extrapolate rail population abundance for the Salton Sea region. Inter- and intra-marsh movements were described from over 5,000 locations obtained from 15 radio-marked rails. Resultant space use patterns indicated that, in general, selenium risk to individuals is not equally shared because of high levels of territoriality and very limited movement throughout the landscape. Moreover, the largest contiguous blocks of habitat are associated with unmanaged marshlands located on the former southeastern shoreline and outside traditional management areas and authorities. Thus, a substantial proportion of the rail population that is using unmanaged marsh on the southeastern shoreline may have disproportionate risk of elevated selenium exposure, yet how that risk translates to population-level effects remains unknown.

California↗

USGS2022

Machine learned daily life history classification using low frequency tracking data and automated modelling pipelines: Application to North American waterfowl

Background Identifying animal behaviors, life history states, and movement patterns is a prerequisite for many animal behavior analyses and effective management of wildlife and habitats. Most approaches classify short-term movement patterns with high frequency location or accelerometry data. However, patterns reflecting life history across longer time scales can have greater relevance to species biology or management needs, especially when available in near real-time. Given limitations in collecting and using such data to accurately classify complex behaviors in the long-term, we used hourly GPS data from 5 waterfowl species to produce daily activity classifications with machine-learned models using “automated modelling pipelines”. Methods Automated pipelines are computer-generated code that complete many tasks including feature engineering, multi-framework model development, training, validation, and hyperparameter tuning to produce daily classifications from eight activity patterns reflecting waterfowl life history or movement states. We developed several input features for modeling grouped into three broad categories, hereafter “feature sets”: GPS locations, habitat information, and movement history. Each feature set used different data sources or data collected across different time intervals to develop the “features” (independent variables) used in models. Results Automated modelling pipelines rapidly developed easily reproducible data preprocessing and analysis steps, identification and optimization of the best performing model and provided outputs for interpreting feature importance. Unequal expression of life history states caused unbalanced classes, so we evaluated feature set importance using a weighted F1-score to balance model recall and precision among individual classes. Although the best model using the least restrictive feature set (only 24 hourly relocations in a day) produced effective classifications (weighted F1 = 0.887), models using all feature sets performed substantially better (weighted F1 = 0.95), particularly for rarer but demographically more impactful life history states (i.e., nesting). Conclusions Automated pipelines generated models producing highly accurate classifications of complex daily activity patterns using relatively low frequency GPS and incorporating more classes than previous GPS studies. Near real-time classification is possible which is ideal for time-sensitive needs such as identifying reproduction. Including habitat and longer sequences of spatial information produced more accurate classifications but incurred slight delays in processing.

Movement Ecology↗

USGS2022

Pathways for avian influenza virus spread: GPS reveals wild waterfowl in commercial livestock facilities and connectivity with the natural wetland landscape

Zoonotic diseases are of considerable concern to the human population and viruses such as avian influenza (AIV) threaten food security, wildlife conservation and human health. Wild waterfowl and the natural wetlands they use are known AIV reservoirs, with birds capable of virus transmission to domestic poultry populations. While infection risk models have linked migration routes and AIV outbreaks, there is a limited understanding of wild waterfowl presence on commercial livestock facilities, and movement patterns linked to natural wetlands. We documented 11 wild waterfowl (three Anatidae species) in or near eight commercial livestock facilities in Washington and California with GPS telemetry data. Wild ducks used dairy and beef cattle feed lots and facility retention ponds during both day and night suggesting use for roosting and foraging. Two individuals (single locations) were observed inside poultry facility boundaries while using nearby wetlands. Ducks demonstrated high site fidelity, returning to the same areas of habitats (at livestock facilities and nearby wetlands), across months or years, showed strong connectivity with surrounding wetlands, and arrived from wetlands up to 1251 km away in the week prior. Telemetry data provides substantial advantages over observational data, allowing assessment of individual movement behaviour and wetland connectivity that has significant implications for outbreak management. Telemetry improves our understanding of risk factors for waterfowl–livestock virus transmission and helps identify factors associated with coincident space use at the wild waterfowl–domestic livestock interface. Our research suggests that even relatively small or isolated natural and artificial water or food sources in/near facilities increases the likelihood of attracting waterfowl, which has important consequences for managers attempting to minimize or prevent AIV outbreaks. Use and interpretation of telemetry data, especially in near-real-time, could provide key information for reducing virus transmission risk between waterfowl and livestock, improving protective barriers between wild and domestic species, and abating outbreaks.

Transboundary and Emerging Diseases↗

USGS2021

Megafires and thick smoke portend big problems for migratory birds

In 2020, the fire season affecting the western United States reached unprecedented levels. The 116 fires active in September consumed nearly 20,822 km 2 ( https://inciweb.nwcg.gov/accessible-view/ Accessed 2020-09-29) with eighty percent of this footprint (16,567 km 2 ) from 68 fires occurring within California, Oregon, and Washington. Although the 2020 fire season was the most extreme on record, it exemplified patterns of increased wildfire size, number, timing, return frequency, and extent which are linked to climate-driven changes in precipitation and temperature affecting fire ignition and severity (Westerling 2016, Goss et al. 2020, Weber and Yadav 2020).

California, Oregon, Washington↗

USGS2021

Migration stopover ecology of Cinnamon Teal in western North America

Identifying migration routes and fall stopover sites of Cinnamon Teal ( Spatula cyanoptera septentrionalium) can provide a spatial guide to management and conservation efforts, and address vulnerabilities in wetland networks that support migratory waterbirds. Using high spatiotemporal resolution GPS-GSM transmitters, we analyzed 61 fall migration tracks across western North America during our three-year study (2017–2019). We marked Cinnamon Teal primarily during spring/summer in important breeding and molting regions across seven states (California, Oregon, Washington, Idaho, Utah, Colorado, and Nevada). We assessed fall migration routes and timing, detected 186 fall stopover sites, and identified specific North American ecoregions where sites were located. We classified underlying land cover for each stopover site and measured habitat selection for 12 land cover types within each ecoregion. Cinnamon Teal selected a variety of flooded habitats including natural, riparian, tidal, and managed wetlands; wet agriculture (including irrigation ditches, flooded fields, and stock ponds); wastewater sites; and golf and urban ponds. Wet agriculture was the most used habitat type (29.8% of stopover locations), and over 72% of stopover locations were on private land. Relatively scarce habitats such as wastewater ponds, tidal marsh, and golf and urban ponds were highly selected in specific ecoregions. In contrast, dry non-habitat across all ecoregions, and dry agriculture in the Cold Deserts and Mediterranean California ecoregions, was consistently avoided. Resources used by Cinnamon Teal often reflected wetland availability across the west and emphasize their adaptability to dynamic resource conditions in arid landscapes. Our results provide much needed information on spatial and temporal resource use by Cinnamon Teal during migration and indicate important wetland habitats for migrating waterfowl in the western United States.

Ecology and Evolution↗

USGS2021

Waterfowl use of wetland habitats informs wetland restoration designs for multi‐species benefits

Extensive global estuarine wetland losses have prompted intensive focus on restoration of these habitats. In California, substantial tracts of freshwater, brackish and tidal wetlands have been lost. Given the anthropogenic footprint of development and urbanization in this region, wetland restoration must rely on conversion of existing habitat types rather than adding new wetlands. These restorations can cause conflicts among stakeholders and species that win or lose depending on identified restoration priorities. Suisun Marsh on the San Francisco Bay Estuary is the largest brackish marsh on the U.S. Pacific coast. To understand how conversion of brackish managed wetlands to tidal marsh would impact waterfowl populations and whether future tidal marsh restorations could provide suitable habitat for dabbling ducks, we examined waterfowl wetland use with a robust GPS‐GSM tracking dataset (442,017 locations) from six dabbling duck species (N=315). Managed wetlands, which comprise 47% of Suisun Marsh, were consistently and strongly selected by waterfowl over tidal marshes, with use ~98% across seasons and species. However, while use of tidal marsh (only 14% of Suisun Marsh) was generally <2%, almost half our ducks (~44%) spent some time in this habitat and exhibited strong utilization of pond‐like features. Ponds only comprise ~10% of this habitat but attracted 44% use (~4.5 times greater than availability). Synthesis and applications : Managed wetlands were vital to dabbling ducks, but losses from conversion of these habitats may be partially mitigated by incorporating pond features that are more attractive to waterfowl, and likely to offer multi‐species benefits, into tidal marsh restoration designs. While waterfowl are presently a common taxon, previously seen calamitous population declines can be avoided through informed ecosystem‐based management that promotes species richness, biodiversity and helps “keep common species common”.

California↗

USGS2021

Interrupted incubation: How dabbling ducks respond when flushed from the nest

Nesting birds must provide a thermal environment sufficient for egg development while also meeting self‐maintenance needs. Many birds, particularly those with uniparental incubation, achieve this balance through periodic incubation recesses, during which foraging and other self‐maintenance activities can occur. However, incubating birds may experience disturbances such as predator or human activity which interrupt natural incubation patterns by compelling them to leave the nest. We characterized incubating mallard Anas platyrhynchos and gadwall Mareca strepera hens’ responses when flushed by predators and investigators in Suisun Marsh, California, USA. Diurnal incubation recesses initiated by investigators approaching nests were 63% longer than natural diurnal incubation recesses initiated by the hen (geometric mean: 226.77 min versus 142.04 min). Nocturnal incubation recesses, many of which were likely the result of predators flushing hens, were of similar duration regardless of whether the nest was partially depredated during the event (115.33 [101.01;131.68] minutes) or not (119.62 [111.96;127.82] minutes), yet were 16% shorter than natural diurnal incubation recesses. Hens moved further from the nest during natural diurnal recesses or investigator‐initiated recesses than during nocturnal recesses, and the proportion of hen locations recorded in wetland versus upland habitat during recesses varied with recess type (model‐predicted means: natural diurnal recess 0.77; investigator‐initiated recess 0.82; nocturnal recess 0.31). Hens were more likely to take a natural recess following an investigator‐initiated recess earlier that same day than following a natural recess earlier that same day, and natural recesses that followed an investigator‐initiated recess were longer than natural recesses that followed an earlier natural recess, suggesting that hens may not fulfill all of their physiological needs during investigator‐initiated recesses. We found no evidence that the duration of investigator‐initiated recesses was influenced by repeated visits to the nest, whether by predators or by investigators, and trapping and handling the hen did not affect investigator‐initiated recess duration unless the hen was also fitted with a backpack‐harness style GPS–GSM transmitter at the time of capture. Hens that were captured and fitted with GPS–GSM transmitters took recesses that were 26% longer than recesses during which a hen was captured but a GPS–GSM transmitter was not attached. Incubation interruptions had measurable but limited and specific effects on hen behavior.

Ecology and Evolution↗

USGS2021

Using high resolution satellite and telemetry data to track flooded habitats, their use by waterfowl, and evaluate effects of drought on waterfowl and shorebird bioenergetics in California

Wetland managers in the Central Valley of California, a dynamic hydrological landscape, require information regarding the amount and location of existing wetland habitat to make decisions on how to best use water resources to support multiple wildlife objectives, particularly during drought. Scientists from the U.S. Geological Survey Western Ecological Research Center (WERC), Point Blue Conservation Science (Point Blue), and the U.S. Fish and Wildlife Service (USFWS) partnered to learn how wetland and flooded agricultural habitats used by waterfowl and shorebirds change during the non-breeding season (July–April) particularly during drought. During extreme drought conditions, the ability to provide sufficient water for wildlife often depends on the timing of water deliveries to managed wetlands and winter-flooded crop fields and decisions on whether to fallow croplands. Waterfowl and shorebirds could be particularly affected by these decisions because they typically rest and feed in flooded habitats. Poor habitat conditions resulting from spatially or temporally suboptimal water deliveries (that is, mismatch between waterfowl habitat needs and timing and location of flooded habitats) could reduce waterfowl hunting opportunities and body condition. Point Blue scientists developed a system for near real-time tracking of habitats used by waterfowl, shorebirds, and some other wetland-dependent “waterbirds” ( www.pointblue.org/watertracker ) and to assess the impacts of drought on habitat availability and on waterfowl and shorebird bioenergetics. The WERC researchers linked these data with near real-time tracking (telemetry) data of duck locations throughout the Valley. The team used these two datasets to relate duck locations to open-water characteristics and to learn how waterfowl use habitats under spatially and temporally changing conditions during drought and non-drought periods. We found that recent extreme drought (2013–15) significantly changed the timing and magnitude of flooding and consequently reduced the availability of habitats used by waterfowl and shorebirds more than other recent historic droughts 2000–11. Drought reduced irrigations of moist soil seed plants and thus there was lower food energy available for waterfowl. Analyses using bioenergetics models indicated that, overall, extreme drought increased food energy deficits (total number of deficit days) for shorebirds and waterfowl. Our analysis indicated a strong direct relationship between duck locations and classified habitat derived from open-water data during the wintering period (October–March). This result helps confirm the application of dynamic water data to identify flooded areas that provide waterfowl habitat. Presence of open water at a 1-hectare resolution can be used effectively to identify flooded landscape areas available as habitat for ducks. Our discoveries from evaluating use of space by ducks also indicated that nighttime feeding locations of ducks were concentrated nearby primary roosts and that foraging distances could depend on hydrologic dynamics of location (Suisun Marsh versus California excluding Suisun Marsh) and time of season (early, middle, late). Other results indicated that some areas on the California landscape with extremely reliable water supplies could receive consistent use by ducks year after year (in essence, almost drought proof). The Water Tracker is set up to automatically track wetland habitat and food availability each year and is making these data available to water and wetland managers. Results from this research are a significant step toward understanding how waterfowl and shorebird habitats can be optimally managed on the landscape to support desired populations of these migratory birds during extreme drought.

California↗

USGS2021

Informing wetland management with waterfowl movement and sanctuary use responses to human-induced disturbance

Long-term environmental management to prevent waterfowl population declines is informed by ecology, movement behavior and habitat use patterns. Extrinsic factors, such as human-induced disturbance, can cause behavioral changes which may influence movement and resource needs, driving variation that affects management efficacy. To better understand the relationship between human-based disturbance and animal movement and habitat use, and their potential effects on management, we GPS tracked 15 dabbling ducks in California over ~4-weeks before, during and after the start of a recreational hunting season in October/November 2018. We recorded locations at 2-min intervals across three separate 24-h tracking phases: Phase 1) two weeks before the start of the hunting season (control (undisturbed) movement); Phase 2) the hunting season opening weekend; and Phase 3) a hunting weekend two weeks after opening weekend. We used GLMM models to analyze variation in movement and habitat use under hunting pressure compared with ‘normal’ observed patterns prior to commencement of hunting. We also compared responses to differing levels of disturbance related to the time of day (high - shooting/~daytime); moderate - non-lethal (~crepuscular); and low - night). During opening weekend flight (% time and distance) more than doubled during moderate and low disturbance and increased by ~50% during high disturbance compared with the pre-season weekend. Sanctuary use tripled during moderate and low disturbance and increased ~50% during high disturbance. Two weeks later flight decreased in all disturbance levels but was only less than the pre-season levels during high disturbance. In contrast, sanctuary use only decreased at night, although not to pre-season levels, while daytime doubled from ~45% to >80%. Birds adjust rapidly to disturbance and our results have implications for energetics models that estimate population food requirements. Management would benefit from reassessing the juxtaposition of essential sanctuary and feeding habitats to optimize wetland management for waterfowl.

Journal of Environmental Management↗

USGS2020

Gambel’s quail survey variability and implications for survey design in the Mohave Desert

Careful design of a wildlife population monitoring strategy is necessary to obtain accurate and precise results whether the purpose of the survey is development of habitat suitability models, to estimate abundance, or assess site occupancy. Important characteristics to consider in survey design are sources of elevated variability, particularly within‐subject variability, which increases the amount of data needed to achieve statistical certainty either in terms of population trend analysis, hypothesis testing, or statistical power. However, alternative objectives, such as associating counts with habitat characteristics, may benefit from increased variation among counts when differences covary with habitat measures. This difference can result in competing needs when developing survey protocols. We investigated the relative precision of differing gamebird monitoring protocols to identify methods with the greatest statistical efficiency. We assessed call‐count transects using standard Breeding Bird Survey protocols (Passive call‐counts) and modified by including longer survey periods and call playback (Active call‐counts), autonomous recording units with supervised call detection (ARU‐recorded calls), camera traps, and roadside covey‐counts for Gambel's quail ( Callipepla gambelii ) in the Mojave Desert (CA, USA) during the spring of 2016. Active call‐counts had the lowest within‐site variation relative to estimated population index values, but Passive call‐count transects may be more efficient for some purposes because more survey stations can be completed within a single survey timeframe. The ARU‐recorded calls may provide a suitable alternative despite larger sample size needs, especially for occupancy surveys because multiple units can be deployed concurrently. The ultimate sample size required will depend on specific study objectives and scope of interest, but camera traps and breeding‐season covey counts are not likely to meet objectives in desert environments.

California↗

USGS2020

Good prospects: High-resolution telemetry data suggests novel brood-site selection behavior in waterfowl

Breeding success should increase with prior knowledge of the surrounding environment, which is dependent upon an animal’s ability to evaluate habitat. Prospecting for nesting locations and migratory stop-over sites are well-established behaviors among bird species. We assessed whether ducks in Suisun Marsh, California, USA, a brackish marsh, prospect for suitable wetlands in the week prior to brooding. K-means cluster analyses grouped 29 mallard and gadwall hens into 3 groups. One group (n=13) demonstrated evidence of brood site prospecting with fewest and latest pre-brooding wetland visits. Of these hens, seven visited their future brood pond an average of 1.14 times and only shortly before brooding (1.29 days), obtaining current information on habitat suitability. For the remaining 6 hens, we did not detect a brooding wetland visit which may be due to data limitations or the need to prospect the specific brood pond was precluded by having acquired sufficient familiarity with the wetland habitat during nest breaks in adjacent wetlands. The second identified group of hens (n=11) visited the brooding wetland most frequently (on 4.55 days), farther in advance (5.27 days), with the fewest unique wetland visits and the earliest brooding date (May 26). The final group of hens (n=5) were the latest to brood (Jun 21) and visited the most wetlands, possibly due to less water or more broods present across the landscape. Brood ponds were always farther from the nest than the nearest ponds indicating that habitat suitability or presence of conspecifics is more important to brood-site selection. Prospecting provides hens with knowledge about current habitat conditions and allows them to ‘crowdsource’ public information regarding use of that habitat by other brooding hens. Prospecting may therefore, benefit ducks inhabiting ephemeral habitats like those within Suisun Marsh, where brood habitat is limited, and water cover changes rapidly during the breeding season.

California↗

USGS2019

GPS tracking data reveals daily spatio-temporal movement patterns of waterfowl

Background Spatio-temporal patterns of movement can characterize relationships between organisms and their surroundings, and address gaps in our understanding of species ecology, activity budgets, bioenergetics, and habitat resource management. Highly mobile waterfowl, which can exploit resources over large spatial extents, are excellent models to understand relationships between movements and resource usage, landscape interactions and specific habitat needs. Methods We tracked 3 species of dabbling ducks with GPS-GSM transmitters in 2015–17 to examine fine-scale movement patterns over 24 h periods (30 min interval), dividing movement pathways into temporally continuous segments and spatially contiguous patches. We quantified distances moved, area used and time allocated across the day, using linear and generalized linear mixed models. We investigated behavior through relationships between these variables. Results Movements and space-use were small, and varied by species, sex and season. Gadwall ( Mareca strepera ) generally moved least (FFDs: 0.5–0.7 km), but their larger foraging patches resulted from longer within-area movements. Pintails ( Anas acuta ) moved most, were more likely to conduct flights > 300 m, had FFDs of 0.8–1.1 km, used more segments and patches per day that they revisited more frequently, resulting in the longest daily total movements. Females and males differed only during the post-hunt season when females moved more. 23.6% of track segments were short duration (1–2 locations), approximately 1/3 more than would be expected if they occurred randomly, and were more dispersed in the landscape than longer segments. Distance moved in 30 min shortened as segment duration increased, likely reflecting phases of non-movement captured within segments. Conclusions Pacific Flyway ducks spend the majority of time using smaller foraging and resting areas than expected or previously reported, implying that foraging areas may be highly localized, and nutrients obtainable from smaller areas. Additionally, movement reductions over time demonstrates behavioral adjustments that represent divergent energetic demands, the detection of which is a key advantage of higher frequency data. Ducks likely use less energy for movement than currently predicted and management, including distribution and configuration of essential habitat, may require reconsideration. Our study illustrates how fine-scale movement data from tracking help understand and inform various other fields of research.

California↗

USGS2019

Moving at the speed of flight: Dabbling duck-movement rates and the relationship with electronic tracking interval

Context. Effective wildlife management requires information on habitat and resource needs, which can be estimated with movement information and modelling energetics. One necessary component of avian models is flight speeds at multiple temporal scales. Technology has limited the ability to accurately assess flight speeds, leading to estimates of questionable accuracy, many of which have not been updated in almost a century. Aims. We aimed to update flight speeds of ducks, and differentiate between migratory and non-migratory flight speeds, a detail that was unclear in previous estimates. We also analysed the difference in speeds of migratory and non-migratory flights, and quantified how data collected at different temporal intervals affected estimates of flight speed. Methods. We tracked six California dabbling duck species with high spatio-temporal resolution GPS–GSM transmitters, calculated speeds of different flight types, and modelled how estimates varied by flight and data interval (30 min to 6 h). Key results. Median migratory speeds were faster (but non-significant) for the larger mallard (Anas platyrhynchos; 82.5 km h–1), northern pintail (Anas acuta; 79.0 km h–1) and gadwall (Mareca strepera; 70.6 km h–1), than the smaller-bodied northern shoveler (Spatula clypeata; 65.7 km h–1), cinnamon teal (Spatula cyanoptera; 63.5 km h–1) and American wigeon (Mareca Americana; 52 km h–1). Migratory flights were faster than non-migratory flights for all species and speeds were consistently slower with an increasing data interval. Implications. The need to balance time and energy requirements may drive different speeds for migratory and non-migratory flights. Lower speeds at longer intervals are likely to be due to a greater proportion of ‘loafing’ time included in flighted segments, demonstrating that data acquired at different intervals provide a means to evaluate and estimate behaviours that influence speed estimation. Shorter-interval data should be the most accurate, but longer-interval data may be easier to collect over lengthier timeframes, so it may be expedient to trade-off a degree of accuracy in broad-scale studies for the larger dataset. Our updated flight speeds for dabbling duck species can be used to parameterise and validate energetics models, guide management decisions regarding optimal habitat distribution, and, ultimately, improve conservation management of wetlands for waterfowl.

Wildlife Research↗

USGS2018

Rising tides: Assessing habitat vulnerability for an endangered salt marsh-dependent species with sea-level rise

Salt marsh-dependent species are vulnerable to impacts of sea-level rise (SLR). Site-specific differences in ecogeomorphic processes result in different SLR vulnerabilities. SLR impacts to Ridgway’s rail ( Rallus obsoletus ) of Southern California (SC) and San Francisco Bay (SF), U.S.A. could foreshadow SLR effects on other coastal endemic species. Salt marsh vulnerabilities to SLR were forecasted across 14 study sites using the Wetland Accretion Rate Model of Ecosystem Resilience, which accounts for changes in above and belowground marsh processes. Changes in suitable habitat for rail were projected with MaxEnt. Under a high (166 cm/100 yr) SLR scenario, current extent of suitable habitat is projected to increase by 34% across the combined area of 14 sites by 2050, but by 2100, total habitat suitability is projected to decrease by 83%, with six salt marshes losing over 95% of suitable habitat. Under a high SLR scenario, SF’s suitable habitat is predicted to increase by 35% at mid-century, and SC’s current suitable habitat extent will increase by 24%. However, by 2100, SF is forecasted to lose 84% of suitable habitat and SC to lose 80% of its current habitat extent. If accretion rates cannot keep pace with SLR, salt marsh obligate species are in danger of being extirpated from their habitat.

California↗

USGS2018

Duck nest depredation, predator behavior, and female response using video

Depredation plays an important role in determining duck nest success and predator and female duck behavior during nest depredation can influence nest fate. We examined depredation of mallard ( Anas platyrhynchos ) and gadwall ( A. strepera ) nests in Suisun Marsh, California, USA, in 2015–2016 with continuous infrared video monitoring to identify nest predators and characterize predator and female duck behavior during depredation events. We recorded predators at 44% of 147 nests monitored. Raccoons ( Procyon lotor ) were the most frequent predator observed at nests (40% of nests visited and 53% of depredated eggs) followed by striped skunks ( Mephitis mephitis ; 27% and 27%), coyotes ( Canis latrans ; 4% and 9%), common ravens ( Corvus corax ; 4% and 9%), gopher snakes ( Pituophis catenifer catenifer ; 19% and 0%), and western yellow‐bellied racers ( Coluber constrictor mormon ; 1% and 0%). The number of eggs depredated per depredation bout varied among predators (raccoons: 7.3 eggs; skunks: 2.5; coyotes: 7.4; ravens: 7.7; and snakes: 0.0). Mammal depredation occurred between 1600 and 0400, whereas snakes and ravens were observed at nests during the day (snakes: 1000–2100; ravens: 1700). Females flushed from nests immediately before predator arrival ( = 29.0 ± 16.6 [SD] sec), and this timing did not vary among predators. However, the length of nest depredation bouts varied among predators. Nest visits by gopher snakes were longer (18.6 ± 19.4 min) than depredation bouts by other predators (12.3 ± 10.7 min), but snakes did not successfully consume any eggs. Females took more time to return to nests when nests were depredated by raccoons (239 ± 137 min), whereas females returned more quickly when nests were visited by skunks (81 ± 163 min) or gopher snakes (15 ± 128 min). Partial clutch depredation occurred at 15% of depredated nests, but only 23% of partially depredated nests successfully hatched ≥1 egg. Our results indicate that predator type and behavior can influence female behavior and nest fate, and that management actions that reduce the effectiveness of raccoons and skunks encountering waterfowl nests may benefit these nesting populations.

Journal of Wildlife Management↗

USGS2017

Changes in the abundance and distribution of waterfowl wintering in the Central Valley of California, 1973–2000

The Central Valley of California is one of the most important areas for wintering waterfowl in the world and the focus of extensive conservation efforts to mitigate for historical losses and counter continuing stressors to habitats. To guide conservation, we analyzed trends in the abundance and distribution (spatiotemporal abundance patterns) of waterfowl and their habitats in the Central Valley and its major subregions (Sacramento Valley, Suisun Marsh, Delta, San Joaquin Valley), from 1973 through 2000. We used existing databases, satellite imagery, and aerial photography to measure habitat area, and aerial surveys and radio telemetry to track the abundance and distribution of wintering waterfowl. Wetlands increased throughout the Central Valley, but agricultural fields flooded after harvest increased greatly to the north in the Sacramento Valley and decreased to the south in the San Joaquin Valley, resulting in an overall increase in the relative availability of winter habitat in the former region. Reflecting the continental decline of the most abundant wintering species (Northern Pintail, Anas acuta ), the overall abundance of wintering waterfowl in the Central Valley declined during our study. By contrast, numbers of the American Wigeon ( A. americana ), Mallard ( A. platyrhynchos ), and Northern Shoveler ( A. clypeata ) were stable, and numbers of the Green-winged Teal ( A. crecca ), Gadwall ( A. strepera ), diving ducks, and geese increased from 1973–1982 to 1998–2000. The areas of greatest abundance of wintering waterfowl within the Central Valley shifted northward as many species responded to changes in the distribution of habitats. Wintering waterfowl migrated earlier in fall and winter from the San Joaquin Valley, Suisun Marsh, and Delta to the Sacramento Valley, and fewer waterfowl emigrated from the Sacramento Valley to other parts of the Central Valley. Because changes in waterfowl distribution were primarily a response to the increase of a beneficial agricultural practice (i.e., the flooding of rice after harvest) in the Sacramento Valley, changing agro-economics, reduction of water supplies, or other factors that reduce this practice could change the abundance and distribution of wintering waterfowl in the Central Valley rapidly. Thus to maintain abundant suitable habitat and restore the historical distribution of wintering waterfowl, our results suggest a continuing need for the conservation of wetlands and other waterfowl habitats with secure water supplies throughout the Central Valley. Despite our findings, achieving goals for winter waterfowl populations in the Central Valley likely will depend on a combination of factors including some acting in breeding ranges farther north or elsewhere outside of the valley.

California↗

USGS2017

Lessons from the past: isotopes of an endangered rail as indicators of underlying change to tidal marsh habitats

Introduction: Tidal marsh systems along the Pacific coast of the United States have experienced substantial stress and loss of area and ecosystem function, which we examined by using the endangered California Ridgway’s Rail, Rallus obsoletus obsoletus (‘rail’) as an indicator of its tidal marsh habitat in the San Francisco Estuary. We organized a collection of historical (1885-1940) and modern (2005-2014) rail feathers and analyzed the feather isotope means for delta carbon (δ 13 C), sulfur (δ 34 S), and nitrogen (δ 15 N) by region and time period. Outcomes: Feather isotopes represented the primary foraging habitat during historical then modern time periods. Neither individual nor regional rail feather isotopes suggested freshwater or terrestrial foraging by the rail. Three regions with both historic and modern feather isotopes revealed non-uniform spatial shifts in isotope levels consistent with a marine based food web and significant δ 15 N enrichment. Discussion: Our results supported the rail’s status as a generalist forager and obligate tidal marsh species throughout the historic record. The variable isoscape trends generated from feather isotope means illustrated a modern loss of the isotopic homogeneity between regions of historical tidal marsh, which correlated with spatially-explicit habitat alterations such as increasing biological invasions and sewage effluent over time. Conclusion: These findings have reinforced the importance of tidal marsh conservation in the face of ongoing underlying changes to these important ecosystems.

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USGS2016

A century of landscape disturbance and urbanization of the San Francisco Bay region affects the present-day genetic diversity of the California Ridgway’s rail (Rallus obsoletus obsoletus)

Fragmentation and loss of natural habitat have important consequences for wild populations and can negatively affect long-term viability and resilience to environmental change. Salt marsh obligate species, such as those that occupy the San Francisco Bay Estuary in western North America, occupy already impaired habitats as result of human development and modifications and are highly susceptible to increased habitat loss and fragmentation due to global climate change. We examined the genetic variation of the California Ridgway’s rail ( Rallus obsoletus obsoletus ), a state and federally endangered species that occurs within the fragmented salt marsh of the San Francisco Bay Estuary. We genotyped 107 rails across 11 microsatellite loci and a single mitochondrial gene to estimate genetic diversity and population structure among seven salt marsh fragments and assessed demographic connectivity by inferring patterns of gene flow and migration rates. We found pronounced genetic structuring among four geographically separate genetic clusters across the San Francisco Bay. Gene flow analyses supported a stepping stone model of gene flow from south-to-north. However, contemporary gene flow among the regional embayments was low. Genetic diversity among occupied salt marshes and genetic clusters were not significantly different. We detected low effective population sizes and significantly high relatedness among individuals within salt marshes. Preserving genetic diversity and connectivity throughout the San Francisco Bay may require attention to salt marsh restoration in the Central Bay where habitat is both most limited and most fragmented. Incorporating periodic genetic sampling into the management regime may help evaluate population trends and guide long-term management priorities.

California↗