C. M. Taylor | Geology Reports

USGS2021

Effects of sample gear on estuarine nekton assemblage assessments and food web model simulations

Long-term fisheries-independent sampling data inform population status and trends of species-specific biomass and are often used to drive biomass-based food web models such as the Comprehensive Aquatic Systems Model (CASM). Indicators such as total biomass and mean trophic level derived from these data and from CASM outputs inform management and facilitate assessments of on-going and predicted coastal change and restoration activities on fisheries, but rely on consistent sampling to enable comparisons across space and time. Changes in coastal estuarine gradients, combined with the availability of new sampling technologies, highlight a need to assess the potential consequences of changing sampling technologies on fisheries data and the cascading impact on model outputs. In Louisiana, USA, CASM models are used to inform coastal restoration projects, relying on 40 years of fisheries-independent data derived from 50′ seine sampling. However, alternative use of electrofishers as a sampling method has been proposed to replace the seine sampling. In this study, we examine data from concurrent seine and electrofisher sampling in Barataria Basin, Louisiana, and compare biomass, assemblage data and CASM outputs related to species biomass, food web structure and energy cycling. In a paired comparison of data in 2018–2019, the electrofisher captured higher total catch and diversity compared to the seine. The electrofisher samples were dominated by shrimp (grass, white, brown) and larger bodied fish, while seine samples were dominated by smaller-bodied fish (i.e., anchovy, menhaden). Ecosystem indicators derived from running the CASM using biomass data from seine and electrofisher sampling separately in two different simulation exercises provide contrasting results. In Simulation Exercise 1, the use of different datasets (long-term CASM calibration, 2018–2019 seine, 2018–2019 electrofisher) to initialize the CASM biomasses did not result in large or long-running changes in the simulated biomasses over time. In contrast, in Simulation Exercise 2, CASM model outputs using adjusted gear ratios indicated changes in biomass structure when using electrofisher data, with a doubling of total food web biomass due to the increased shrimp count, and a 13% increase in total energy flow through the food web. Conversions based on area and gear efficiency for overall catch may be useful in maintaining the continuity of historical data. However, differences in species-specific catch due to gear selectivity could have large consequences for constructing and calibrating fish and ecosystem models and remain difficult to reconcile. These differences in assemblages, and estimated biomasses for key food web species, suggest careful consideration in changing gears.

Louisiana↗

USGS2018

The spatial scale of biotic change in Chihuahuan Desert fish assemblages

1. We examined riverine desert fish assemblages in the Chihuahuan Desert, USA at multiple spatial scales of similarity to assess long-term changes to assemblage distinctiveness, identify individual species responsible for changes, and determine the importance of geographic context and species resolution in interpreting patterns of change. 2. We used a well-documented historical data set on fish distribution and abundance, and recent collections of fishes that provided a paired analytical design across 36 localities spanning nearly three decades of time. Patterns of faunal homogenization and differentiation were assessed at basin-wide, sub-basin and river-reach scales with species occurrence and relative abundance data. Individual species responses were examined to identify the drivers of assemblage change across time. 3. Patterns of similarity varied across spatial scales and produced seemingly incongruous trends in assemblage similarity across time. Patterns of assemblage distinctiveness depended on the spatial extent of the analyses, the geographical structuring of the fish assemblages, and whether occurrence or relative abundance data were used. These dependencies led to interesting and conflicting patterns of homogenization and differentiation. The Rio Grande sub-basin showed strong homogenization with convergence between upstream and downstream reaches that corresponded to declining water quality and quantity from the Rio Conchos in Mexico. In contrast, the Pecos River sub-basin showed strong differentiation between upstream and downstream reaches that corresponded to the successful colonization and spread of the non-native gulf killifish (Fundulus grandis) in the highly degraded upper reach. Spatial variability in fish assemblages and their degree of change from historical conditions were largely dependent on anthropogenic modifications to the flow regime and variability in the success of invasive gulf killifish in the basin. 4. The use of species occurrence or abundance data, and the spatial scale of analysis are crucial choices in studies of faunal homogenization and differentiation, and we have demonstrated how these choices lead to variable results for our study system. Our multi-scale approach and examination of individual species responses identified the ultimate drivers of these differences and illustrated the importance of scale-dependent effects and geographical context on patterns of assemblage distinctiveness, especially with regard to species invasion, species loss and abundance shifts.

Texas↗