Geology topics

Bruce E. Jaffe

Publications and source records attributed to Bruce E. Jaffe.

At least 37 records · Page 2Linked to original sources

USGS2019

Morphodynamic resilience of intertidal mudflats on a seasonal time scale

Intertidal mudflats are morphodynamic features present in many estuaries worldwide. Often located between vegetated shores and deep channels they comprise valuable ecosystems and serve to protect the hinterland by attenuating waves. Although mudflats are persistently present on yearly to decadal time scales, little is known on their morphodynamic adaptation to short‐term variations in forcing such as storms, spring‐neap tidal cycles, and sediment supply. This study aims to explore the morphodynamic resilience of mudflats to seasonal variations in forcing. First, we compare transects observed in South Bay, California, at 3‐ to 6‐monthly intervals. Second, we present the results of a process‐based, morphodynamic profile model (Mflat). Mflat is an open source, Matlab code that describes both cross‐shore and alongshore tidal hydrodynamics as well as a stationary wave model. An advection‐diffusion equation solves sediment transport while bed level changes occur by the divergence of the sediment transport field. Mflat reproduces the observed South San Francisco Bay profile in equilibrium with significant skill. Short‐term variations in hydrodynamic forcing and sediment characteristics disturb the profile mainly at the channel‐shoal edge. The modeled profile disturbance is consistent with observations. The modeled profile is remarkably resilient since it recovers to the equilibrium profile within weeks to months. The model results suggest that 3‐monthly observation intervals are probably too long to discriminate processes responsible for the profile disturbance. These processes may include variations in sediment supply, mudflat erodibility, and wave action as well as the spring‐neap tidal cycle.

California↗

USGS2019

The roles of flow acceleration and deceleration in sediment suspension in the surf zone

Prediction of sediment suspension in the surf zone remains elusive. We explore how suspended sediment concentration at 19 cm above the bed in the mid-surf zone during a storm is influenced by flow acceleration and deceleration. There is a tendency for higher suspended sediment concentrations during onshore flow, with decelerating onshore flows having higher concentrations than steady, accelerating, or reversing flows. The development of models that exploit information on flow acceleration, deceleration, and flow reversal may lead to improved ability to predict suspended sediment transport in the surf zone and resulting geomorphic changes.

Conference Paper↗

USGS2019

Organic geochemical investigation of far‐field tsunami deposits of the Kahana Valley, O'ahu, Hawai'i

Far‐field tsunami deposits observed in the Kahana Valley, O'ahu, Hawai'i (USA), were investigated for their organic‐geochemical content. During short high‐energy events, (tsunamis and storms) organic and chemical components are transported with sediment from marine to terrestrial areas. This study investigates the use of anthropogenic based organic geochemical compounds (such as polycyclic aromatic hydrocarbons, pesticides and organochlorides) as a means to identify tsunami deposits. Samples were processed by solid‐liquid extraction and analyzed using gas chromatography–mass spectrometry. A total of 21 anthropogenic marker compounds were identified, of which 11 compounds were selected for detailed analysis. Although the tsunami deposits pre‐date industrial activity in Hawaii by several hundred years, distinct changes were found in the concentrations of anthropogenic marker compounds between sandy tsunami deposits and the surrounding mud/peat layers, which may help in identifying tsunami deposits within cores. As expected, low overall concentrations of anthropogenic markers and pollutants were observed due to the lack of industrial input‐sources and little anthropogenic environmental impact at the study site. This geochemical characterization of tsunami deposits shows that anthropogenic markers have significant potential as another high‐resolution, multi‐proxy method for identifying tsunamis in the sedimentary record.

Hawai'i↗

USGS2019

Slough evolution and legacy mercury remobilization induced by wetland restoration in South San Francisco Bay

Coastal wetlands have a long history of degradation and destruction due to human development. Now recognized as one of the most productive ecosystems in the world, substantial efforts are being made to restore this critical habitat. While wetland restoration efforts are generally viewed as beneficial in terms of providing wildlife habitat and flood control, they are often accompanied by dramatic physical and chemical changes that may result in unintended consequences, which are rarely studied. Alviso Slough, a tidal slough in South San Francisco Bay, California, is the site of an ongoing effort to restore former salt-production ponds to intertidal marsh habitat. Restoration is complicated by the fact that (1) the ponds undergoing restoration are severely subsided and (2) subsurface sediments within the slough and surrounding ponds are contaminated with legacy mercury deposits. Due to concerns regarding mercury remobilization, restoration has proceeded in a cautious, methodical manner. To assess the amount of legacy mercury remobilized since restoration began, we developed a technique of combining high-resolution, biannual measurements of bathymetric scour with mercury concentration measurements from sediment cores. We estimate that 52 kg (±3) of mercury was remobilized in the 6 years since restoration began. Net bathymetric change analyses revealed seasonal trends of peak erosion during the winter months and little to no net change during summer months. Our analyses provide crucial insight on the spatial and temporal scales of geomorphic evolution within a tidal slough resulting from both natural (seasonal) variability and restoration actions. The technique presented here could be applied to other study sites and various sediment-associated contaminants of concern to aid in the design and management of restoration projects aiming to minimize negative impacts from legacy contaminants.

California↗

USGS2019

A revised continuous surface elevation model for modeling

A digital elevation model (DEM) is an essential component of any hydrodynamic model. The Delta Modeling Section (Section) has maintained a database of bathymetry soundings and levee surveys for decades and published a 10-meter (10m) DEM for the San Francisco Bay and Sacramento-San Joaquin Delta (Delta) (California Department of Water Resources 2012). In collaboration with the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center, the California Department of Water Resources (DWR) has continued to upgrade these DEMs based on newer survey data and improved interpolation methodologies. An updated San Francisco Bay-Delta bathymetric/topographic digital elevation model was published by the USGS (Fregoso, Wang, Ateljevich, and Jaffe 2017). Both DWR and USGS continue to work on the elevation models for several reasons. First, high-resolution multibeam bathymetry data continues to become available. A good portion of the newer collections are performed at locations where bathymetry data is lacking, or of poor quality, or where model sensitivity to bathymetry is known to be high, so the effort has a high return on investment. Recent high-resolution multibeam datasets easily support the development of accurate 2-meter (2m) DEMs, although shallow water, turbidity, vegetation, and the gap between the multibeam data and terrestrial data from light detection and ranging (LiDAR) remain vexing issues that fuel development of enhanced techniques. In some locations, migration toward 2m resolution models is motivated by geographical structure even where there has been little improvement in the underlying data. DEMs at 10m resolution are insufficient to adequately describe small-scale terrain features, such as levee crests or the main conveyance channel through a narrow reach, such as Middle River. As a result, elevation modelers have traditionally needed to perform feature enforcement for 10m DEMs, but not for the Section’s 2m DEMs which do resolve these features (California Department of Resources 2012). There are several other problems associated with a coarse target resolution, including reduced conveyance and rough contours where channels run oblique to the elevation model. In places where the topography demands a finer elevation model, the Section and others have adopted improved interpolation techniques for single-beam data to produce reasonable 2m DEMs that preserve features on appropriate scales.

California↗

USGS2018

Bed shear stress estimation under wave conditions using near-bottom measurements: Comparison of methods

Understanding the influence of waves on bed shear stress is critical for predicting morphodynamical behaviours in coastal areas. Near-bed flow was measured on the middle and lower intertidal mudflats along the Jiangsu coast, China, using a three-dimensional acoustic velocimeter that collected a 3.5-cm vertical profile at 1mm resolution and sample rate of 25 Hz. On the lower and middle tidal flats, velocities from ~2.5-6 cmab (cm above bed) and ~0-3 cmab were measured, respectively. Current-induced bed shear stresses were calculated from turbulent kinetic energy (TKE) at the 11th measurement layer (i.e., 5.1 cm below the probe) using wave-turbulence decomposition and from a logarithmic fit to the horizontal mean velocity profile (LP). A wave boundary layer extended from the bed up to 3 cmab when the significant wave height was 0.23 m; when it was present the near-bed mean velocity profile was non-logarithmic. Waves suppress the development of a vertical velocity gradient and lead to an overestimation of bed shear stress when calculated using the log profile assumption. The TKE method is more accurate than the LP method when waves are present and measurements are at least partially within the wave boundary layer. Accurate calculation of current-induced bed shear stress depends on probe height and wave conditions.

Jiangsu coast↗

USGS2017

Description of gravity cores from San Pablo Bay and Carquinez Strait, San Francisco Bay, California

Seventy-two gravity cores were collected by the U.S. Geological Survey in 1990, 1991, and 2000 from San Pablo Bay and Carquinez Strait, California. The gravity cores collected within San Pablo Bay contain bioturbated laminated silts and sandy clays, whole and broken bivalve shells (mostly mussels), fossil tube structures, and fine-grained plant or wood fragments. Gravity cores from the channel wall of Carquinez Strait east of San Pablo Bay consist of sand and clay layers, whole and broken bivalve shells (less than in San Pablo Bay), trace fossil tubes, and minute fragments of plant material.

California↗

USGS2017

A new seamless, high-resolution digital elevation model of the San Francisco Bay-Delta Estuary, California

Climate change, sea-level rise, and human development have contributed to the changing geomorphology of the San Francisco Bay - Delta (Bay-Delta) Estuary system. The need to predict scenarios of change led to the development of a new seamless, high-resolution digital elevation model (DEM) of the Bay – Delta that can be used by modelers attempting to understand potential future changes to the estuary system. This report details the three phases of the creation of this DEM. The first phase took a bathymetric-only DEM created in 2005 by the U.S. Geological Survey (USGS), refined it with additional data, and identified areas that would benefit from new surveys. The second phase began a USGS collaboration with the California Department of Water Resources (DWR) that updated a 2012 DWR seamless bathymetric/topographic DEM of the Bay-Delta with input from the USGS and modifications to fit the specific needs of USGS modelers. The third phase took the work from phase 2 and expanded the coverage area in the north to include the Yolo Bypass up to the Fremont Weir, the Sacramento River up to Knights Landing, and the American River up to the Nimbus Dam, and added back in the elevations for interior islands. The constant evolution of the Bay-Delta will require continuous updates to the DEM of the Delta, and there still are areas with older data that would benefit from modern surveys. As a result, DWR plans to continue updating the DEM.

California↗

USGS2017

How can climate change and engineered water conveyance affect sediment dynamics in the San Francisco Bay-Delta system?

Suspended sediment concentration is an important estuarine health indicator. Estuarine ecosystems rely on the maintenance of habitat conditions, which are changing due to direct human impact and climate change. This study aims to evaluate the impact of climate change relative to engineering measures on estuarine fine sediment dynamics and sediment budgets. We use the highly engineered San Francisco Bay-Delta system as a case study. We apply a process-based modeling approach (Delft3D-FM) to assess the changes in hydrodynamics and sediment dynamics resulting from climate change and engineering scenarios. The scenarios consider a direct human impact (shift in water pumping location), climate change (sea level rise and suspended sediment concentration decrease), and abrupt disasters (island flooding, possibly as the results of an earthquake). Levee failure has the largest impact on the hydrodynamics of the system. Reduction in sediment input from the watershed has the greatest impact on turbidity levels, which are key to primary production and define habitat conditions for endemic species. Sea level rise leads to more sediment suspension and a net sediment export if little room for accommodation is left in the system due to continuous engineering works. Mitigation measures like levee reinforcement are effective for addressing direct human impacts, but less effective for a persistent, widespread, and increasing threat like sea level rise. Progressive adaptive mitigation measures to the changes in sediment and flow dynamics resulting from sea level rise may be a more effective strategy. Our approach shows that a validated process-based model is a useful tool to address long-term (decades to centuries) changes in sediment dynamics in highly engineered estuarine systems. In addition, our modeling approach provides a useful basis for long-term, process-based studies addressing ecosystem dynamics and health.

California↗

USGS2017

The application of microtextural and heavy mineral analysis to discriminate between storm and tsunami deposits

Recent work has applied microtextural and heavy mineral analyses to sandy storm and tsunami deposits from Portugal, Scotland, Indonesia and the USA. We looked at the interpretation of microtextural imagery (scanning electron microscopy) of quartz grains and heavy mineral compositions. We consider inundation events of different chronologies and sources (the AD 1755 Lisbon and 2004 Indian Ocean tsunamis, the Great Storm of 11 January 2005 in Scotland, and Hurricane Sandy in 2012) that affected contrasting coastal and hinterland settings with different regional oceanographic conditions. Storm and tsunami deposits were examined along with potential source sediments (alluvial, beach, dune and nearshore sediments) to determine provenance. Results suggest that tsunami deposits typically exhibit a significant spatial variation in grain sizes, microtextures and heavy minerals. Storm deposits show less variability, especially in vertical profiles. Tsunami and storm quartz grains had more percussion marks and fresh surfaces compared to potential source material. Moreover, in the studied cases, tsunami samples had fewer fresh surfaces than storm deposits. Heavy mineral assemblages are typically site-specific. The concentration of heavy minerals decreases upwards in tsunamigenic units, whereas storm sediments show cyclic concentrations of heavy minerals, reflected in the laminations observed macroscopically in the deposits.

Geological Society, London, Special Publications↗

USGS2017

Hurricane Sandy washover deposits on Fire Island, New York

Washover deposits on Fire Island, New York, from Hurricane Sandy in 2012 were investigated a year after the storm to document the sedimentary characteristics of hurricane washover features. Sediment data collected in the field includes stratigraphic descriptions and photos from trenches, bulk sediment samples, U-channels, and gouge and push cores. Samples and push cores were further analyzed in the laboratory for grain size, density variations using x-ray computed tomography (CT), and surface microtexture using a scanning electron microscope (SEM). Elevation profiles of washover features were measured using Differential Global Positioning System (DGPS) with Real Time Kinematic processing. The DGPS elevations were compared to lidar (light detection and ranging) data from pre- and post-Sandy surveys to assess the degree to which washover deposit thicknesses changed within the year following deposition. Hurricane Sandy washover deposits as much as 1 meter thick were observed in trenches. Initial results show that the upper parts of the deposits have been reworked significantly in some places by wind, but there are still areas where the deposits are almost entirely intact. Where mostly intact, the washover deposits consist of massive or weakly laminated sand near the base, overlain by more strongly laminated sands.

New York↗

USGS2017

Is “morphodynamic equilibrium” an oxymoron?

Morphodynamic equilibrium is a widely adopted yet elusive concept in the field of geomorphology of coasts, rivers and estuaries. Based on the Exner equation, an expression of mass conservation of sediment, we distinguish three types of equilibrium defined as static and dynamic, of which two different types exist. Other expressions such as statistical and quasi-equilibrium which do not strictly satisfy the Exner conditions are also acknowledged for their practical use. The choice of a temporal scale is imperative to analyse the type of equilibrium. We discuss the difference between morphodynamic equilibrium in the “real world” (nature) and the “virtual world” (model). Modelling studies rely on simplifications of the real world and lead to understanding of process interactions. A variety of factors affect the use of virtual-world predictions in the real world (e.g., variability in environmental drivers and variability in the setting) so that the concept of morphodynamic equilibrium should be mathematically unequivocal in the virtual world and interpreted over the appropriate spatial and temporal scale in the real world. We draw examples from estuarine settings which are subject to various governing factors which broadly include hydrodynamics, sedimentology and landscape setting. Following the traditional “tide-wave-river” ternary diagram, we summarize studies to date that explore the “virtual world”, discuss the type of equilibrium reached and how it relates to the real world.

Earth-Science Reviews↗

USGS2016

Mudflat morphodynamics and the impact of sea level rise in South San Francisco Bay

Estuarine tidal mudflats form unique habitats and maintain valuable ecosystems. Historic measurements of a mudflat in San Fancsico Bay over the past 150 years suggest the development of a rather stable mudflat profile. This raises questions on its origin and governing processes as well as on the mudflats’ fate under scenarios of sea level rise and decreasing sediment supply. We developed a 1D morphodynamic profile model (Delft3D) that is able to reproduce the 2011 measured mudflat profile. The main, schematised, forcings of the model are a constant tidal cycle and constant wave action. The model shows that wave action suspends sediment that is transported landward during flood. A depositional front moves landward until landward bed levels are high enough to carry an equal amount of sediment back during ebb. This implies that, similar to observations, the critical shear stress for erosion is regularly exceeded during the tidal cycle and that modelled equilibrium conditions include high suspended sediment concentrations at the mudflat. Shear stresses are highest during low water, while shear stresses are lower than critical (and highest at the landward end) along the mudflat during high water. Scenarios of sea level rise and decreasing sediment supply drown the mudflat. In addition, the mudflat becomes more prone to channel incision because landward accumulation is hampered. This research suggests that sea level rise is a serious threat to the presence of many estuarine intertidal mudflats, adjacent salt marshes and their associated ecological values.

California↗

USGS2016

Uncertainty in tsunami sediment transport modeling

Erosion and deposition from tsunamis record information about tsunami hydrodynamics and size that can be interpreted to improve tsunami hazard assessment. We explore sources and methods for quantifying uncertainty in tsunami sediment transport modeling. Uncertainty varies with tsunami, study site, available input data, sediment grain size, and model. Although uncertainty has the potential to be large, published case studies indicate that both forward and inverse tsunami sediment transport models perform well enough to be useful for deciphering tsunami characteristics, including size, from deposits. New techniques for quantifying uncertainty, such as Ensemble Kalman Filtering inversion, and more rigorous reporting of uncertainties will advance the science of tsunami sediment transport modeling. Uncertainty may be decreased with additional laboratory studies that increase our understanding of the semi-empirical parameters and physics of tsunami sediment transport, standardized benchmark tests to assess model performance, and development of hybrid modeling approaches to exploit the strengths of forward and inverse models.

Journal of Disaster Research↗

USGS2015

The role of suspension events in cross-shore and longshore suspended sediment transport in the surf zone

Suspension of sand in the surf zone is intermittent. Especially striking in a time series of concentration are periods of intense suspension, suspension events, when the water column suspended sediment concentration is an order of magnitude greater than the mean concentration. The prevalence, timing, and contribution of suspension events to cross-shore and longshore suspended sediment transport are explored using field data collected in the inner half of the surf zone during a large storm at Duck, NC. Suspension events are defined as periods when the concentration is above a threshold. Events tended to occur during onshore flow under the wave crest, resulting in an onshore contribution to the suspended sediment transport. Even though large events occurred less than 10 percent of the total time, at some locations onshore transport associated with suspension events was greater than mean-current driven offshore-directed transport during non-event periods, causing the net suspended sediment transport to be onshore. Events and fluctuations in longshore velocity were not correlated. However, events did increase the longshore suspended sediment transport by approximately the amount they increase the mean concentration, which can be up to 35%. Because of the lack of correlation, the longshore suspended sediment transport can be modeled without considering the details of the intensity and time of events as the vertical integration of the product of the time-averaged longshore velocity and an event-augmented time-averaged concentration. However, to accurately model cross-shore suspended sediment transport, the timing and intensity of suspension events must be reproduced.

North Carolina↗

USGS2015

Tsunami geology in paleoseismology

The 2004 Indian Ocean and 2011 Tohoku-oki disasters dramatically demonstrated the destructiveness and deadliness of tsunamis. For the assessment of future risk posed by tsunamis it is necessary to understand past tsunami events. Recent work on tsunami deposits has provided new information on paleotsunami events, including their recurrence interval and the size of the tsunamis (e.g. [187–189]). Tsunamis are observed not only on the margin of oceans but also in lakes. The majority of tsunamis are generated by earthquakes, but other events that displace water such as landslides and volcanic eruptions can also generate tsunamis. These non-earthquake tsunamis occur less frequently than earthquake tsunamis; it is, therefore, very important to find and study geologic evidence for past eruption and submarine landslide triggered tsunami events, as their rare occurrence may lead to risks being underestimated. Geologic investigations of tsunamis have historically relied on earthquake geology. Geophysicists estimate the parameters of vertical coseismic displacement that tsunami modelers use as a tsunami's initial condition. The modelers then let the simulated tsunami run ashore. This approach suffers from the relationship between the earthquake and seafloor displacement, the pertinent parameter in tsunami generation, being equivocal. In recent years, geologic investigations of tsunamis have added sedimentology and micropaleontology, which focus on identifying and interpreting depositional and erosional features of tsunamis. For example, coastal sediment may contain deposits that provide important information on past tsunami events [190, 191]. In some cases, a tsunami is recorded by a single sand layer. Elsewhere, tsunami deposits can consist of complex layers of mud, sand, and boulders, containing abundant stratigraphic evidence for sediment reworking and redeposition. These onshore sediments are geologic evidence for tsunamis and are called ‘tsunami deposits’ (Figs. 26 and 27). Tsunami deposits can be classified into two groups: modern tsunami deposits and paleotsunami deposits. A modern tsunami deposit is a deposit whose source event is known. A paleotsunami deposit is a deposit whose age is estimated and has a source that is either inferred to be a historical event or is unknown.

Report↗

USGS2014

Sedimentary organic biomarkers suggest detrimental effects of PAHs on estuarine microbial biomass during the 20th century in San Francisco Bay, CA, USA

Hydrocarbon contaminants are ubiquitous in urban aquatic ecosystems, and the ability of some microbial strains to degrade certain polycyclic aromatic hydrocarbons (PAHs) is well established. However, detrimental effects of petroleum hydrocarbon contamination on nondegrader microbial populations and photosynthetic organisms have not often been considered. In the current study, fatty acid methyl ester (FAME) biomarkers in the sediment record were used to assess historical impacts of petroleum contamination on microbial and/or algal biomass in South San Francisco Bay, CA, USA. Profiles of saturated, branched, and monounsaturated fatty acids had similar concentrations and patterns downcore. Total PAHs in a sediment core were on average greater than 20× higher above ∼200 cm than below, which corresponds roughly to the year 1900. Isomer ratios were consistent with a predominant petroleum combustion source for PAHs. Several individual PAHs exceeded sediment quality screening values. Negative correlations between petroleum contaminants and microbial and algal biomarkers – along with high trans/cis ratios of unsaturated FA, and principle component analysis of the PAH and fatty acid records – suggest a negative impacts of petroleum contamination, appearing early in the 20th century, on microbial and/or algal ecology at the site.

California↗

USGS2014

Late Holocene sedimentary environments of south San Francisco Bay, California, illustrated in gravity cores

Data are reported here from 51 gravity cores collected from the southern part of San Francisco Bay by the U.S. Geological Survey in 1990. The sedimentary record in the cores demonstrates a stable geographic distribution of facies and spans a few thousand years. Carbon-14 dating of the sediments suggests that sedimentation rates average about 1 mm/yr. The geometry of the bay floor and the character of the sediment deposited have remained about the same in the time spanned by the cores. However, the sedimentary record over periods of centuries or decades is likely to be much more variable. Sediments containing a few bivalve shells and bivalve or oyster coquinas are most often found west of the main channel and near the San Mateo Bridge. Elsewhere in the south bay, shells are rare except in the southernmost reaches where scattered gastropod shells are found.

California↗