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Brian O’Malley

Publications and source records attributed to Brian O’Malley.

At least 37 records · Page 2Linked to original sources
USGS2023

Comparison of traditional and geometric morphometrics using Lake Huron ciscoes of the Coregonus artedi complex

Here we determine how traditional morphometrics (TM) compares with geometric morphometrics (GM) in discriminating among morphologies of four forms of ciscoes of the Coregonus artedi complex collected from Lake Huron. One of the forms comprised two groups of the same deepwater cisco separated by capture depth, whereas the other three forms were shallow-water ciscoes. Our three groups of shallow-water ciscoes were better separated (3% versus 19% overlap) in Principle Component Analysis (PCA) with TM data than with GM data incorporating semilandmarks (evenly spaced nonhomologous landmarks used to bridge between widely separated homologous landmarks). Our two deepwater cisco groups, comprising a putatively single form collected from different depths, separated more in PCAs with GM data (33% overlap) than in PCAs with TM data (66% overlap), an anomaly caused by greater decompression of the swimbladder and deformation of the body wall in the group captured at greater depths. Separation of the two deepwater cisco groups captured at different depths was not affected by the removal of semilandmarks. Assignment of forms using canonical variate analysis (CVA) accurately assigned 86% of individuals using TM data, 98% of individuals using GM data incorporating semilandmarks, and 100% of individuals using GM data without semilandmarks. However, we considered assignments from the same form of deepwater cisco into separate groups as misassignments resulting from different capture depths, which reduced the accuracy of assignments with GM data to 66% with semilandmarks. Our study implies that TM will continue to have an important role in morphological discrimination within Coregonus and other fishes similarly shaped.

Lake Huron↗
USGS2023

Lake Ontario’s nearshore zooplankton: Community composition changes and comparisons to the offshore

In large lake systems the nearshore habitat is an intermediate zone between the shoreline and offshore, is an important nursery for larval fish, and is highlighted as an area in need of research in the Laurentian Great Lakes. In this study, we used two long-term monitoring programs to characterize the nearshore zooplankton community composition using seasonal data (May – October) and to compare the nearshore and offshore zooplankton community composition changes over time (1998 – 2019) to determine if the changes were synchronized. In the nearshore, we found the highest zooplankton biomass during the late summer/early fall (August 27th – Oct 6th), compared to mid-summer (July 1st – Aug 26th) and late spring (May 20th – June 30th). In the summer, the nearshore zooplankton community was dominated by cladocerans while copepods dominated the offshore community. From 1998 to 2019, both nearshore and offshore copepods shifted from a cyclopoid to a calanoid-dominated state, but the details of this change were different. For example, taxon-specific analysis revealed that despite reduced cyclopoids in both habitats, Mesocyclops edax increased in the nearshore. Additionally, taxon-specific analysis suggested the changes occurred an average of three years earlier in the nearshore. Using Analysis of Similarity, the nearshore and offshore summer zooplankton community compositions became increasingly distinct over time. Results from this study highlight the uniqueness of the nearshore in large lake systems, the importance of seasonal and long-term monitoring, and the potential of the nearshore as an early indicator of offshore changes.

Lake Ontario↗
USGS2023

Seasonal habitat utilization provides evidence for site fidelity during both spawn and non-spawning seasons in Lake Ontario cisco Coregonus artedi

The Lake Ontario cisco Coregonus artedi population declined in the 20th century, and restoration of this species is a management objective. Management tools to restore cisco are limited because little is known about cisco spawning behavior and habitat use. We tagged 76 cisco from a remnant population in Chaumont Bay, Lake Ontario with acoustic transmitters and characterized seasonal habitat use from 2016 to 2021. We also used fine-scale acoustic telemetry, coregonine egg collections, and trap net catches to better understand cisco spawning behaviors related to spawn timing and site selection. Network analysis and Bayesian standard ellipse area indicated that cisco utilization of lake regions and bathythermal niche space varied by season. During spawning season, male cisco concentrated in Chaumont Bay over shallow (∼3 m) rocky shoals where cisco egg deposition was the greatest. Spawning site fidelity to Chaumont Bay was observed for all male cisco surviving to successive years (n = 23). Acoustic-tagged females did not survive consecutive spawning seasons, but trap net catches indicated females were less abundant and occupied spawning areas for less time than males. Post spawn, some individual male cisco (n = 5/23) had differential, yet consistent, annual migrations to separate regions of Lake Ontario, suggesting fidelity to feeding sites. Our results reveal seasonal habitats used by male cisco and, importantly, caution that environmental changes to a single spawning site could negatively affect the remnant Chaumont Bay cisco population. Specialized conservation efforts may be necessary when cisco spawning aggregations have diverse post-spawn migratory behaviors but a central spawning ground.

Chaumont Bay, Lake Ontario↗
USGS2023

Field and laboratory validation of new sampling gear to quantify coregonine egg deposition and larval emergence across spawning habitat gradients

The influence of habitat and environmental conditions on Great Lakes coregonine reproduction is not well described, in part, because we lack sampling gears for early life stages that are effective across habitats. We designed new egg and larval emergence traps to quantify coregonine reproductive success across variable depths and substrates and tested them in laboratory and field settings. In the laboratory, our new metal ring egg traps had greater egg retention (94–100%) and faster post-catch processing (5–7 min) relative to a commonly employed fiber mat trap (30–67% and 30–60 min). In Lake Ontario’s Chaumont Bay, egg densities for lake whitefish Coregonus clupeaformis (0–5,832 eggs m −2 ) and cisco Coregonus artedi (0–426,501 eggs m −2 ) measured with metal ring traps (n = 112) varied across habitats but were greatest between 2–5 m on rock and dreissenid mussel substrates. Emergence traps used an inverted cone, fine mesh, and a clear collection chamber to capture positively phototactic emerging larvae. In the laboratory, traps captured 69–80% of emerged larvae. In Chaumont Bay, emergence traps deployed for 21 days after ice out caught only cisco larvae. Emergence rates varied across habitats (0–118 larvae m −2 day −1 , n = 85) but were highest on dreissenid mussel reef substrate. Our samplers improved processing efficiency and facilitated large sample sizes to quantify variability in egg deposition densities and emergence rates across habitats. These methods can advance coregonine conservation by determining how anthropogenic changes to habitat and environmental conditions influence incubation success.

Journal of Great Lakes Research↗
USGS2023

Bottom trawl assessment of Lake Ontario's benthic preyfish community, 2022

Since 1978, surveys of Lake Ontario preyfish communities have provided information on the status and trends of the benthic preyfish community related to Fish Community Objectives that includes understanding preyfish population dynamics and community diversity. Beginning in 2015, the benthic preyfish survey expanded from US-only to incorporate Canadian sites, increasing the survey’s spatial coverage to a lake-wide scale. Additionally, sampling in eastern US embayments (Black River, Chaumont, Guffin, and Henderson Bays), that were historically sampled during a September bottom trawl survey to index Yellow Perch ( Perca flavescens ; 1978–2007), resumed in 2015. The current survey provides abundance indices for sculpins, Round Goby ( Neogobius melanostomus ) and Bloater ( Coregonus hoyi ) with survey techniques, gear and timing comparable to Lake Michigan. This alignment provides a necessary biological reference point for measuring the success of Lake Ontario Bloater reintroduction. In 2022, the collaborative benthic preyfish survey completed 171 bottom trawl tows across main lake and embayment sites at depths from 6 to 222 m. In total, the 2022 survey sampled 141,552 fish from 34 species. Round Goby was the most numerically abundant species comprising 36% of the total catch, followed by Alewife ( Alosa pseudoharengus ) and Deepwater Sculpin ( Myoxocephalus thompsonii ), at 20% and 16%, respectively. Alewife accounted for most (623 kg) of the fish biomass sampled during the 2022 survey (total=2,197 kg), followed by Deepwater Sculpin (547 kg), and Round Goby (262 kg). Slimy Sculpin ( Cottus cognatus ) lake-wide biomass density (0.03 kg/ha) remained low relative to historical observations from US waters during the 1980-1990s and was similar to the average from the previous three survey years (2019-2021 average 0.04 ± 0.02 kg/ha). Lake-wide Deepwater Sculpin biomass density reached a new high (4.4 kg/ha) in 2022. Embayment catches continue to have unique species assemblages compared to main lake habitat. Historically common native benthic preyfish species like Trout-perch ( Percopsis omiscomaycus ), Spottail Shiner ( Notropis hudsonius ), and darters ( Etheostoma spp.), that are now rare at main lake trawl sites, still occur in some embayment trawl sites.

Lake Ontario↗
USGS2023

Lake Ontario August gillnet survey and Lake Trout assessment, 2022

Lake Ontario Lake Trout (Salvelinus namaycush) rehabilitation has been annually assessed with fishery independent surveys since 1983, in an effort to evaluate program benchmarks and compare observations with management objectives. These surveys provide information on the abundance, strain composition, and condition of the adult Lake Trout stock, as well as information on levels of natural recruitment, Sea Lamprey (Petromyzon marinus) wounding rates, and abundance indices of other coldwater fish species (Burbot Lota lota, Cisco Coregonus artedi, and Lake Whitefish C. clupeaformis). In 2022, the catch per unit effort (CPUE) of total Lake Trout in gillnets remained high (18.9 fish/lift; highest since 1998) compared to lows observed during 2005–2009 (average = 7.5 fish/lift). The CPUE of immature Lake Trout in the 2022 survey was the highest since 1994. Wild-produced mature Lake Trout remain rare in the adult population (2.4% of adult catch). Strain composition of stocked fish indicated more than half (56%) of all coded-wire tagged Lake Trout captured in 2022 were from the Superior Klondike strain. Sea Lamprey wounding rates were above target levels in 2022 (3.15 A1 wounds per 100 Lake Trout) and were nearly double the 2021 rate. Lake Trout condition (predicted weight at length) was the highest since data collection began in 1983. Overall, the 2022 survey results indicate that adult Lake Trout are abundant and of high condition but composed mostly of hatchery-origin strains, suggesting recruitment of wild-produced offspring to the adult stock continues to be limited.

Lake Ontario↗
USGS2022

Importance of nonindigenous harpacticoids (Crustacea: Copepoda) decrease with depth in Lake Ontario

Harpacticoid copepods can be a substantial component of the meiobenthic community in lakes and serve an ecological role as detritivores. Here we present the first species-level lake-wide quantitative assessment of the harpacticoid assemblage of Lake Ontario with emphasis on the status of nonindigenous species. Additionally, we provide COI-5P sequences of harpacticoid taxa through Barcode of Life Data System (BOLD). Harpacticoids were collected at depths from 0.1 to 184 m and from a range of substrates from August to September 2018 as part of the Cooperative Science and Monitoring Initiative (CSMI) offshore benthic survey. Twenty-six meiobenthic samples were analyzed using microscopy for community composition analysis of harpacticoids. We found thirteen indigenous and three nonindigenous species of harpacticoid, with the introduced species dominating at shallow depths. The community transitioned from nonindigenous to indigenous species dominance as depth increased. Nonindigenous species accounted for 79% of the community (by abundance) at depths <20 m, 55% from 20 to 40 m, and only 24% at depths >40 m. The nonindigenous species encountered included the first detections of Schizopera borutzkyi (Monchenko, 1967) and Heteropsyllus nunni (Coull, 1975) from Lake Ontario. S. borutzkyi was the most abundant harpacticoid species in the lake, approaching a maximum density of 50,000/m 2 and a lake-wide average density of 7,900/m 2 . Numerically important indigenous species included Bryocamptus nivalis (Willey, 1925), Canthocamptus robertcokeri (Wilson, 1958), Canthocamptus staphylinoides (Pearse, 1905), and Moraria cristata (Chappuis, 1929). The prevalence of nonindigenous harpacticoids in the meiobenthos of Lake Ontario suggests further investigations of Great Lakes meiofauna communities are warranted.

Lake Ontario↗
USGS2022

Results of the collaborative Lake Ontario bloater restoration stocking and assessment, 2012–2020

Bloater, Coregonus hoyi , are deepwater planktivores native to the Laurentian Great Lakes and Lake Nipigon. Interpretations of commercial fishery time series suggest they were common in Lake Ontario through the early 1900s but by the 1950s were no longer captured by commercial fishers. Annual bottom trawl surveys that began in 1978 and sampled extensively across putative bloater habitat only yielded one individual (1983), suggesting that the species had been locally extirpated. In 2012, a multiagency restoration program stocked bloater into Lake Ontario from gametes collected in Lake Michigan. From 2012 to 2020, 1,028,191 bloater were stocked into Lake Ontario. Bottom trawl surveys first detected stocked fish in 2015, and through 2020 ten bloater have been caught (total length mean = 129 mm, s.d. = 44 mm, range: 96–240 mm). Hatchery applied marks and genetic analyses confirmed the species identification and identified stocking location for some individuals. Trawl capture locations and acoustic telemetry suggested that stocked fish dispersed throughout the main lake within months or sooner, and the depth distribution of recaptured bloater was similar to historic distributions in Lake Ontario and other Great Lakes. Predicted bloater trawl catches, based on modeled population abundance and trawl survey efficiency, were similar to observed catches, suggesting that post-stocking survival is less than 20% and contemporary bottom trawl surveys can quantify bloater abundance at low densities and track restoration.

Lake Ontario↗
USGS2021

Incorporation of non-native species in the diets of cisco (Coregonus artedi) from eastern Lake Ontario

Cisco Coregonus artedi was once an important native fish in Lake Ontario; however, after multiple population crashes, the cisco stock has yet to recover to historic abundances. Rehabilitation of cisco in Lake Ontario is a fish community management objective, but the extent to which recent non-native species and pelagic food web changes have influenced cisco is not well understood. We described cisco diets in contemporary Lake Ontario following the addition and spread of non-native zooplankton species. We collected 618 cisco and processed 178 for full diet analysis in eastern Lake Ontario using mid-water trawls and bottom-set gill nets from 2016 to 2020. We found that Lake Ontario cisco were mostly zooplanktivorous, and non-native zooplankton dominated their diet during July and September. Cisco smaller than 300 mm had a more diverse diet including both native and non-native zooplankton, while cisco larger than 300 mm fed almost exclusively on non-native predatory cladocerans Bythotrephes longimanus and Cercopagis pengoi (98.9% consumed prey dry mass). We also found fish eggs, presumed to be of coregonine origin in 75% of non-empty December-collected cisco diets, suggesting eggs subsidize cisco diets when available. Juvenile round goby Neogobius melanostomus , alewife Alosa pseudoharengus and rainbow smelt Osmerus mordax were found in 2% of all analyzed non-empty stomachs. Lake Ontario cisco diet appears to be more similar to zooplanktivorous Lake Superior cisco than Lake Michigan where piscivory is prevalent. Lake Ontario cisco diets reflected zooplankton community changes indicating that non-native predatory cladocerans are now an important energy source supporting this native species.

Eastern Lake Ontario↗
USGS2021

2020 Status of the Lake Ontario lower trophic levels

Significant Findings for Year 2020: Note that due to covid-19 restrictions, offshore sampling was limited in 2020. 1) May – Oct total phosphorus (TP) in 2020 was 10.6 µg/L (offshore) and 7.7 µg/L (nearshore), higher than the long-term (1995-2019) average in the offshore (6.2 µg/L) and close to average in the nearshore (7.8 µg/L); mean TP values for the past decade (2010-2019) were 6.0 µg/L and 7.9 µg/L in the offshore and nearshore, respectively. In 2020, TP concentrations were significantly higher (p=0.03) in the offshore compared to the nearshore. Note that offshore duplicate samples had high relative percent difference (average 54%. 6-117%) making inferences for the offshore in 2020 uncertain. 2) May – Oct epilimnetic chlorophyll-a was similar at nearshore (1.9 µg/L) and offshore (2.1 µg/L) sites. These values were slightly higher than the average for 1995 – 2019 (1.7 µg/L, offshore; 1.5 µg/L, nearshore) and higher than for the last decade (1.4 µg/L, both offshore and nearshore). 3) May – Oct Secchi depth ranged from 3.5 m to 10.4 m (11 ft to 34 ft) at individual sites and was not significantly different between nearshore (6.3 m; 20.7 ft) and offshore (6.5 m; 21.3 ft) locations. Long-term (1995-2019) average was 7.2 m in the offshore and 6.4 m in the nearshore; means for the last decade were 7.8 m in the offshore and 6.2 m in the nearshore. 4) Despite higher TP values in 2020 than in recent years, TP, chlorophyll-a and Secchi depth are indicative of oligotrophic conditions in the offshore of Lake Ontario. 5) Nearshore summer zooplankton biomass was 10.5 µg/L, near the all-time low (9.4 µg/L, 2017) since monitoring began in 1995. Offshore epilimnetic summer zooplankton biomass was 11.7 µg/L. These values are similar to biomass in the last decade (2010-2019). 6) Peak (July) epilimnetic biomass of Cercopagis was 3.0 µg/L in the nearshore and represented 25% of the zooplankton community at that time; Cercopagis was absent from the July offshore epilimnetic samples in 2020 but was present in whole water column samples taken in August by other agencies. Epilimnetic biomass of Bythotrephes peaked in late-September in both the nearshore (1.0 µg/L) and offshore (1.8 µg/L) and represented 10% and 18% of the zooplankton community at those times, respectively. 7) Summer nearshore and offshore epilimnetic zooplankton density and biomass declined significantly 1995 – 2020. The declines were due mainly to reductions in cyclopoid copepods in both habitats.

Lake Ontario↗
USGS2021

Bottom trawl assessment of benthic preyfish community in Lake Ontario

Since 1978, the Lake Ontario benthic preyfish survey has provided information on the status and trends of the benthic preyfish community related to Lake Ontario Fish Community Objectives that include understanding preyfish population dynamics and community diversity. Beginning in 2015, the benthic preyfish survey expanded from US-only to incorporate lake-wide sampling sites which drastically increased the survey’s spatial coverage. In 2020, the collaborative benthic preyfish survey completed 82 bottom trawl tows across main lake and embayment sites at depths from 6 to 226 m. Compared to previous years, the survey was largely confined to ports east of Rochester on the US side, and east of Wesleyville on the Canadian side due to COVID-19 travel constraints. In total, the survey sampled 109,315 fish from 32 species in 2020. Round goby was the most numerically abundant species comprising 59% of total catch, followed by alewife (27%), and deepwater sculpin (7%). Despite being a common species represented in historical catches, slimy sculpin comprised only 0.05% of the total catch, with only 53 fish sampled in 2020. Annual biomass indices were among the lowest reported for slimy sculpin across the entire time series, whereas deepwater sculpin biomass remained high but showed a decrease from values observed in 2019. Deepwater sculpin condition in 2020 was lower than in 2019 but similar to values observed in 2017-2018. Community diversity remained high relative to historically lower values when round goby and deepwater sculpin were not captured in trawl catches. Round goby biomass in 2020 was the highest on the US time series, but not on the lake-wide series, highlighting the need to resume lake-wide sampling to further understand how regional vs lake-wide sampling affects benthic preyfish population estimates.

Lake Ontario↗
USGS2021

Bottom trawl assessment of Lake Ontario's benthic preyfish community, 2021

Since 1978, the Lake Ontario preyfish community survey has provided information on the status and trends of the benthic preyfish community related to Fish Community Objectives that includes understanding preyfish population dynamics and community diversity. Beginning in 2015, the benthic preyfish survey expanded from US-only to incorporate lake-wide sampling sites which increased the survey’s spatial coverage, and resumed sampling in eastern embayments (Black River, Chaumont, Guffin, and Henderson Bays) that were historically sampled during a September bottom trawl survey to index yellow perch from 1978 to 2007. In 2021, the collaborative benthic preyfish survey completed 195 bottom trawl tows across main lake and embayments at depths from 5 to 226 m. New embayment sites at Bay of Quinte, Sodus, and Little Sodus Bay were added to the survey in 2021 to compare fish communities across nearshore sites. In total, the 2021 survey sampled 109,178 fish from 35 species. Round goby ( Neogobius melanostomus ) was the most numerically abundant species comprising 44% of the total catch, followed by deepwater sculpin ( Myoxocephalus thompsonii ), and alewife ( Alosa pseudoharengus ) at 17% and 11%, respectively. Deepwater sculpin accounted for most (406 kg) of the fish biomass sampled during the 2021 survey (total=1,995 kg), followed by round goby (257 kg), and common carp (252 kg). Slimy sculpin ( Cottus cognatus ) biomass was higher in 2021 than in 2020, when spatial coverage was reduced. Deepwater sculpin biomass remained high in 2021 and similar to observations since 2019. White perch biomass ( Morone americana ) in Black River Bay has increased compared to observations from historical surveys. Yellow perch ( Perca flavescens ) accounted for most of the benthic preyfish biomass across the embayments surveyed in 2021 except for the Bay of Quinte and Black River Bay, where white perch accounted for a greater proportion of the fish community biomass.

Lake Ontario↗
USGS2020

Comparison of specimen- and image-based morphometrics in Cisco

Morphometric data from fish are typically generated using one of two methods: direct measurements made on a specimen or extraction of distances from a digital picture. We compared data on 12 morphometrics collected with these two methods on the same collection of Cisco Coregonus artedi from Lake Ontario, North America, to assess the degree of bias in measurements made directly on a specimen- vs. an image-based method. We also assessed the degree of reproducibility within the image-based method by evaluating the amount of variation between different analysts for each morphometric method. Our results indicate specific morphometrics may be more prone to bias across the two methods and between analysts. Four of 12 morphometrics evaluated showed significant deviation from a 1:1 relationship that would be expected if the imaged-based method produced accurate specimen-based measurements. Pelvic fin length and pelvic–anal fin distance had the highest between-analyst variation for image-based landmarks, indicating low reproducibility for these metrics, compared with pectoral fin or total length, which had lower between-analyst variation. Although some morphometric measurements can be accurately obtained with either method, and therefore potentially used interchangeably in studies on Cisco morphology, our findings highlight the importance of considering method bias in morphometric studies that use data collected by different methods.

Journal of Fish and Wildlife Management↗
USGS2020

The freshwater mysid Mysis diluviana (Audzijonyte and Väinölä, 2005) (Mysida: Mysidae) consumes detritus in the presence of Daphnia (Cladocera: Daphniidae)

Freshwater mysids of the Mysis relicta group are omnivorous macroinvertebrates that form an important link between fishes and lower trophic levels in many north temperate to Arctic lakes, where they exhibit diel vertical migration (DVM) to exploit subsurface food-rich layers at night. Benthic food resources have been assumed to be less important for mysid diets than pelagic zooplankton. Studies have nevertheless indicated that mysids consume benthic sedimented detritus, calling this assumption into question. We conducted a food-choice experiment to evaluate the feeding preferences of Mysis diluviana (Audzijonyte & Vainola, 2005) by presenting field-caught specimens in individual foraging arenas with multiple choices of food. Experimental food treatments included a preferred pelagic prey (Daphnia), a presumed less desirable benthic resource (detritus), and a combination of both. We hypothesized that M. diluviana 1) prefers Daphnia over detritus and consumes only Daphnia in combination treatments, and 2) would not consume detritus except when detritus was the only food source available. Contrary to our hypothesis, M. diluviana readily consumed detritus in the presence of Daphnia. M. diluviana unexpectedly consumed more individuals of Daphnia in the presence rather than in the absence of detritus. Our results demonstrate that mysids take advantage of benthic food resources even in the presence of a presumably preferred zooplankton prey, calling to question the long-held assumption that benthic resources are unimportant when considering the trophic role of freshwater mysids of the M. relicta group.

Journal of Crustacean Biology↗
USGS2020

Benthic habitat is an integral part of freshwater Mysis ecology

Diel vertical migration (DVM) is common in aquatic organisms. The trade‐off between reduced predation risk in deeper, darker waters during the day and increased foraging opportunities closer to the surface at night is a leading hypothesis for DVM behaviour. Diel vertical migration behaviour has dominated research and assessment frameworks for Mysis , an omnivorous mid‐trophic level macroinvertebrate that exhibits strong DVM between benthic and pelagic habitats and plays key roles in many deep lake ecosystems. However, some historical literature and more recent evidence indicate that mysids also remain on the bottom at night, counter to expectations of DVM. We surveyed the freshwater Mysis literature using Web of Science (WoS; 1945–2019) to quantify the frequency of studies on demographics, diets, and feeding experiments that considered, assessed, or included Mysis that did not migrate vertically but remained in benthic habitats. We supplemented our WoS survey with literature searches for relevant papers published prior to 1945, journal articles and theses not listed in WoS, and additional references known to the authors but missing from WoS (e.g. only 47% of the papers used to evaluate in situ diets were identified by WoS). Results from the survey suggest that relatively little attention has been paid to the benthic components of Mysis ecology. Moreover, the literature suggests that reliance on Mysis sampling protocols using pelagic gear at night provides an incomplete picture of Mysis populations and their role in ecosystem structure and function. We summarise current knowledge of Mysis DVM and provide an expanded framework that more fully considers the role of benthic habitat. Acknowledging benthic habitat as an integral part of Mysis ecology will enable research to better understand the role of Mysis in food web processes.

Freshwater Biology↗
USGS2020

Bottom trawl assessment of Lake Ontario prey fishes, 2019

Multi-agency, collaborative Lake Ontario bottom trawl surveys provide information for decision making related to Fish Community Objectives including predator-prey balance and understanding prey fish community diversity. In 2019, bottom trawl surveys in April (n = 252 tows) and October (n = 160 tows) sampled main lake and embayments at depths from 5–226 m. Combined, the surveys captured 283,383 fish from 39 species. Alewife were 67% of the total catch by number while round goby, deepwater sculpin, and rainbow smelt comprised 13, 10, and 4% of the catch, respectively. In 2019, the lake-wide adult alewife biomass index declined from 2018 and age-1 biomass, a measure of reproductive success the previous year, was low. Year-class catch curve models identified years where estimates from surveys conducted only in U.S. waters were biased, potentially due to a greater portion of the alewife population inhabiting unsampled Canadian waters. Accounting for spatial survey bias, these model estimates indicated the 2019 adult alewife biomass was the lowest value in the 42-year time series. Models also identified the extent to which age-1 alewife biomass was historically underestimated, however lake-wide results from 2016-2019 appear less biased. If below-average year-class estimates from 2017 and 2018 are accurate, adult alewife biomass will continue to decline in 2020. Abundance indices for other pelagic prey fishes such as rainbow smelt, threespine stickleback, emerald shiner, and cisco were low and similar to 2018 values. Pelagic prey fish diversity is low because a single species, alewife, dominates the community. Deepwater sculpin and round goby were the most abundant demersal (bottom-oriented) prey fishes in 2019. Despite declines in slimy sculpin and other nearshore prey fishes, demersal prey fish community diversity has increased as deepwater sculpin and round goby comprise more even portions of the community. New experimental trawl sites in embayment habitats generally captured more species, a higher proportion of native species, and higher densities relative to main lake habitats. In 2019, a western tubenose goby (Proterorhinus semilunaris) was captured for the first time in the trawl surveys.

Lake Ontario↗
USGS2020

2019 Status of the Lake Ontario Lower Trophic Levels

Spring total phosphorus (TP) in 2019 was 3.2 µg/L (offshore) and 4.7 µg/L (nearshore), both all-time lows; however, there is no significant time trend in our data series (1995-2019 for nearshore; 2002-2019 for offshore). Apr/May – Oct mean TP concentrations were low at both nearshore and offshore locations (range, 3.7 – 6.5 µg/L). TP and SRP concentrations were not significantly different between nearshore and offshore habitats. Chlorophyll- a and Secchi depth values are indicative of oligotrophic conditions in nearshore and offshore habitats. Offshore summer chlorophyll-a declined significantly 1995 – 2019. Nearshore chlorophyll- a increased 1995 – 2004 and then stabilized 2005 – 2019. In 2019, epilimnetic chlorophyll-a averaged between 1.3 and 2.9 μg/L across sites, and Apr/May – Oct concentrations were not significantly different between nearshore and offshore sites. Summer Secchi depth increased significantly in the offshore 1995 – 2019 from ~6 m to ~8 m. In the nearshore Secchi depth increased 1995 – 2004 but has remained around 6 m since 1999. Apr/May – Oct Secchi depth ranged from 3.8 m to 9.1 m (12 ft to 30 ft) at individual sites and was significantly higher offshore (7.6 m; 25 ft) than nearshore (5.7 m; 19 ft). In 2019, nearshore summer zooplankton biomass increased to 16.7 mg/m 3 after an all-time low (10.3 mg/m 3 ) in 2017. Offshore biomass (12.0 mg/m 3 ) was near the all-time low (8.1 mg/m 3 , 2006). Apr/May – Oct epilimnetic zooplankton density and biomass were not different between nearshore and offshore sites. However, zooplankton average size was significantly higher in the offshore (0.72 mm) than the nearshore (0.61 mm). Peak (July) epilimnetic biomass of Cercopagis was 2.4 mg/m 3 in the nearshore and 1.4 mg/m 3 in the offshore. Peak (September) epilimnetic biomass of Bythotrephes was 2.0 mg/m 3 in the nearshore and 2.9 mg/m 3 in the offshore. Summer nearshore zooplankton density and biomass declined significantly 1995 – 2004 and then remained stable 2005 – 2019. The decline was due mainly to reductions in cyclopoids copepods. Summer epilimnetic daytime offshore zooplankton density decreased significantly 1995 – 2004, but biomass did not. Density and biomass declined significantly 1995 – 2019. Density was 3885/m 3 in 2019, about one-fourth the level observed the previous year. Offshore summer epilimnetic zooplankton biomass in 2019 was 12 mg/m 3 —well below the mean from 2005 – 2018 (20 mg/m 3 ). Most offshore zooplankton biomass was found in the metalimnion in July and early-October, and in the hypolimnion in September. Limnocalanus dominated the metalimnion in July while daphnids comprised most of the biomass in October. In September, Limnocalanus dominated the hypolimnion.

New York, Ontario↗