Geology topics

Benjamin H. Letcher

Publications and source records attributed to Benjamin H. Letcher.

26 records · Page 2Linked to original sources

USGS2013

Basin-scale phenology and effects of climate variability on global timing of initial seaward migration of Atlantic salmon (Salmo salar)

Migrations between different habitats are key events in the lives of many organisms. Such movements involve annually recurring travel over long distances usually triggered by seasonal changes in the environment. Often, the migration is associated with travel to or from reproduction areas to regions of growth. Young anadromous Atlantic salmon ( Salmo salar ) emigrate from freshwater nursery areas during spring and early summer to feed and grow in the North Atlantic Ocean. The transition from the freshwater (‘parr’) stage to the migratory stage where they descend streams and enter salt water (‘smolt’) is characterized by morphological, physiological and behavioural changes where the timing of this parr-smolt transition is cued by photoperiod and water temperature. Environmental conditions in the freshwater habitat control the downstream migration and contribute to within- and among-river variation in migratory timing. Moreover, the timing of the freshwater emigration has likely evolved to meet environmental conditions in the ocean as these affect growth and survival of the post-smolts. Using generalized additive mixed-effects modelling, we analysed spatio-temporal variations in the dates of downstream smolt migration in 67 rivers throughout the North Atlantic during the last five decades and found that migrations were earlier in populations in the east than the west. After accounting for this spatial effect, the initiation of the downstream migration among rivers was positively associated with freshwater temperatures, up to about 10 °C and levelling off at higher values, and with sea-surface temperatures. Earlier migration occurred when river discharge levels were low but increasing. On average, the initiation of the smolt seaward migration has occurred 2.5 days earlier per decade throughout the basin of the North Atlantic. This shift in phenology matches changes in air, river, and ocean temperatures, suggesting that Atlantic salmon emigration is responding to the current global climate changes.

Global Change Biology↗

USGS2013

Linking movement and reproductive history of brook trout to assess habitat connectivity in a heterogeneous stream network

1. Defining functional connectivity between habitats in spatially heterogeneous landscapes is a particular challenge for small-bodied aquatic species. Traditional approaches (e.g. mark–recapture studies) preclude an assessment of animal movement over the life cycle (birth to reproduction), and movement of individuals may not represent the degree of gene movement for fecund species. We investigated the degree of habitat connectivity (defined as the exchange of individuals and genes between mainstem and tributary habitats) in a stream brook trout (Salvelinus fontinalis) population using mark–recapture [passive integrated transponder (PIT) tags], stationary PIT-tag antennae and genetic pedigree data collected over 4 years (3425 marked individuals). We hypothesised that: (i) a combination of these data would reveal higher estimates of animal movement over the life cycle (within a generation), relative to more temporally confined approaches, and (ii) movement estimates of individuals within a generation would differ from between-generation movement of genes because of spatial variation in reproductive success associated with high fecundity of this species. Over half of PIT-tagged fish (juveniles and adults) were recaptured within 20 m during periodic sampling, indicating restricted movement. However, continuous monitoring with stationary PIT-tag antennae revealed distinct peaks in trout movements in June and October–November, and sibship data inferred post-emergence movements of young-of-year trout that were too small to be tagged physically. A combination of these methods showed that a moderate portion of individuals (28–33%) moved between mainstem and tributary habitats over their life cycle. Patterns of reproductive success varied spatially and temporally. The importance of tributaries as spawning habitat was discovered by accounting for reproductive history. When individuals born in the mainstem reproduced successfully, over 50% of their surviving offspring were inferred to have been born in tributaries. This high rate of gene movement to tributaries was cryptic, and it would have been missed by estimates based only on movement of individuals. This study highlighted the importance of characterising animal movement over the life cycle for inferring habitat connectivity accurately. Such movements of individuals can contribute to substantial gene movements in a fecund species characterised by high variation in reproductive success.

Freshwater Biology↗

USGS2011

Fine-scale population structure and riverscape genetics of brook trout ( Salvelinus fontinalis ) distributed continuously along headwater channel networks

Linear and heterogeneous habitat makes headwater stream networks an ideal ecosystem in which to test the influence of environmental factors on spatial genetic patterns of obligatory aquatic species. We investigated fine-scale population structure and influence of stream habitat on individual-level genetic differentiation in brook trout ( Salvelinus fontinalis ) by genotyping eight microsatellite loci in 740 individuals in two headwater channel networks (7.7 and 4.4 km) in Connecticut, USA. A weak but statistically significant isolation-by-distance pattern was common in both sites. In the field, many tagged individuals were recaptured in the same 50-m reaches within a single field season (summer to fall). One study site was characterized with a hierarchical population structure, where seasonal barriers (natural falls of 1.5–2.5 m in height during summer base-flow condition) greatly reduced gene flow and perceptible spatial patterns emerged because of the presence of tributaries, each with a group of genetically distinguishable individuals. Genetic differentiation increased when pairs of individuals were separated by high stream gradient (steep channel slope) or warm stream temperature in this site, although the evidence of their influence was equivocal. In a second site, evidence for genetic clusters was weak at best, but genetic differentiation between individuals was positively correlated with number of tributary confluences. We concluded that the population-level movement of brook trout was limited in the study headwater stream networks, resulting in the fine-scale population structure (genetic clusters and clines) even at distances of a few kilometres, and gene flow was mitigated by ‘riverscape’ variables, particularly by physical barriers, waterway distance (i.e. isolation-by-distance) and the presence of tributaries.

Connecticut↗

USGS2010

Sibship reconstruction for inferring mating systems, dispersal and effective population size in headwater brook trout ( Salvelinus fontinalis ) populations

Brook trout Salvelinus fontinalis populations have declined in much of the native range in eastern North America and populations are typically relegated to small headwater streams in Connecticut, USA. We used sibship reconstruction to infer mating systems, dispersal and effective population size of resident (non-anadromous) brook trout in two headwater stream channel networks in Connecticut. Brook trout were captured via backpack electrofishing using spatially continuous sampling in the two headwaters (channel network lengths of 4.4 and 7.7 km). Eight microsatellite loci were genotyped in a total of 740 individuals (80–140 mm) subsampled in a stratified random design from all 50 m-reaches in which trout were captured. Sibship reconstruction indicated that males and females were both mostly polygamous although single pair matings were also inferred. Breeder sex ratio was inferred to be nearly 1:1. Few large-sized fullsib families (>3 individuals) were inferred and the majority of individuals were inferred to have no fullsibs among those fish genotyped (family size = 1). The median stream channel distance between pairs of individuals belonging to the same large-sized fullsib families (>3 individuals) was 100 m (range: 0–1,850 m) and 250 m (range: 0–2,350 m) in the two study sites, indicating limited dispersal at least for the size class of individuals analyzed. Using a sibship assignment method, the effective population size for the two streams was estimated at 91 (95%CI: 67–123) and 210 (95%CI: 172–259), corresponding to the ratio of effective-to-census population size of 0.06 and 0.12, respectively. Both-sex polygamy, low variation in reproductive success, and a balanced sex ratio may help maintain genetic diversity of brook trout populations with small breeder sizes persisting in headwater channel networks.

Connecticut↗

USGS2010

Use of portable antennas to estimate abundance of PIT-tagged fish in small streams: Factors affecting detection probability

Portable passive integrated transponder (PIT) tag antenna systems can be valuable in providing reliable estimates of the abundance of tagged Atlantic salmon Salmo salar in small streams under a wide range of conditions. We developed and employed PIT tag antenna wand techniques in two controlled experiments and an additional case study to examine the factors that influenced our ability to estimate population size. We used Pollock's robust‐design capture–mark–recapture model to obtain estimates of the probability of first detection ( p ), the probability of redetection ( c ), and abundance ( N ) in the two controlled experiments. First, we conducted an experiment in which tags were hidden in fixed locations. Although p and c varied among the three observers and among the three passes that each observer conducted, the estimates of N were identical to the true values and did not vary among observers. In the second experiment using free‐swimming tagged fish, p and c varied among passes and time of day. Additionally, estimates of N varied between day and night and among age‐classes but were within 10% of the true population size. In the case study, we used the Cormack–Jolly–Seber model to examine the variation in p , and we compared counts of tagged fish found with the antenna wand with counts collected via electrofishing. In that study, we found that although p varied for age‐classes, sample dates, and time of day, antenna and electrofishing estimates of N were similar, indicating that population size can be reliably estimated via PIT tag antenna wands. However, factors such as the observer, time of day, age of fish, and stream discharge can influence the initial and subsequent detection probabilities.

North American Journal of Fisheries Management↗

USGS2010

Modeling migratory energetics of Connecticut River American shad ( Alosa sapidissima ): implications for the conservation of an iteroparous anadromous fish

We present a simulation model in which individual adult migrant American shad ( Alosa sapidissima ) ascend the Connecticut River and spawn, and survivors return to the marine environment. Our approach synthesizes bioenergetics, reproductive biology, and behavior to estimate the effects of migratory distance and delays incurred at dams on spawning success and survival. We quantified both the magnitude of effects and the consequences of uncertainty in the estimates of input variables. Behavior, physiology, and energetics strongly affected both the distribution of spawning effort and survival to the marine environment. Delays to both upstream and downstream movements had dramatic effects on spawning success, determining total fecundity and spatial extent of spawning. Delays, combined with cues for migratory reversal, also determined the likelihood of survival. Spawning was concentrated in the immediate vicinity of dams and increased with greater migratory distance and delays to downstream migration. More research is needed on reproductive biology, behavior, energetics, and barrier effects to adequately understand the interplay of the various components of this model; it does provide a framework, however, that suggests that provision of upstream passage at dams in the absence of expeditious downstream passage may increase spawning success — but at the expense of reduced iteroparity.

Connecticut, Massachusetts, New Hampshire, Vermont↗

USGS2008

Impacts of Low-Flow and Stream-Temperature Changes on Endangered Atlantic Salmon - Current Research

Recent climate studies in New England and the northeastern United States have shown evidence of physical changes over time, including trends toward earlier snowmelt runoff, decreasing river ice, and increasing spring water temperatures. A U.S. Geological Survey (USGS) study funded by the National Global Warming and Wildlife Science Center will be investigating changes in summer low streamflows and stream temperatures and the potential effects of those changes on endangered Atlantic salmon populations. The study also will evaluate management options that would be most likely to mitigate the effects of any changes in streamflow and temperature.

Fact Sheet↗

USGS1997

Prey patchiness and larval fish growth and survival: inferences from an individual-based model

We used an individual-based simulation model to evaluate how prey patchiness and fish swimming behavior affect larval fish survival and mortality source (predation or starvation). Simulations revealed that cohort survival increased linearly with greater average patch residence times and that patch residence times for individual fish with different fates (survived, starved, eaten) diverged substantially during the first few days of feeding. Further, by examining the interaction of patch spatial distribution (uniform random versus clumped) with three possible swimming behaviors, we found that swimming behavior, via its effect on prey encounter and feeding rates, affected both cohort survival rates and whether fish died from predation or starvation, but that the spatial distribution of patches (fine-scale (100s m)) only influenced whether fish died from predation or starvation. Within a particular patch spatial arrangement, however, patch intensity (division of food between patches and non-patches) had a major effect on survival. Except at high food levels, fish did not survive when there were no patches, suggesting that average, well-mixed prey densities will not support sufficiently rapid growth for survival. As patch intensity increased, survival increased to a maximum and then declined, with peak survival occurring at higher patch intensity as average food concentration declined. Finally, the degree of patchiness also determined the intensity of selection on growth rates. In patchier environments, there was stronger selection for fast growth rates leading to eight-fold differences in average cohort growth rates after only three days of growth. In general, survival was not directly related to fast cohort growth the best survival occurred with high average prey densities and weak patchiness. Prey patchiness, by influencing the average as well as the variance in individual growth rates, can have a substantial impact on survival rates of larval fish cohorts.

Ecological Modelling↗