Arliss J Winship | Geology Reports

USGS2021

Modeling at-sea density of marine birds to support renewable energy planning on the Pacific outer continental shelf of the contiguous United States

This report describes the at-sea spatial distributions of marine birds in Pacific OCS waters off the contiguous U.S. (Figure 1.1) to inform marine spatial planning in the region. The goal was to estimate long-term average spatial distributions for marine bird species using all available science-quality transect survey data and numerous bathymetric, oceanographic, and atmospheric predictor variables. We developed seasonal habitat-based spatial models of the at-sea distribution for 33 individual species and 13 taxonomic groups of marine birds throughout the study region. A statistical modeling framework was used to estimate numerical relationships between bird sighting data (i.e., standardized counts) and a range of temporal (e.g., Pacific Decadal Oscillation [PDO] index), spatially static (e.g., depth), and spatially dynamic (e.g., sea surface chlorophyll-a concentration) environmental variables. The estimated relationships were then used to predict spatially explicit long-term average density (individuals per km 2 ) throughout the study area for each species/group in each of four seasons. Bird sighting data came from multiple scientific survey programs and consisted of at-sea counts of birds collected between 1980 and 2017 using boat-based and fixed-wing aerial transect survey methods. Spatial environmental variables were derived from remote sensing satellite data and an ocean dynamics model.

California, Oregon, Washington↗

USGS2020

Good practices for species distribution modeling of deep-sea corals and sponges for resource management: Data collection, analysis, validation, and communication

Resource managers in the United States and worldwide are tasked with identifying and mitigating trade-offs between human activities in the deep sea (e.g., fishing, energy development, and mining) and their impacts on habitat-forming invertebrates, including deep-sea corals and sponges (DSCS). Related management decisions require information about where DSCS occur and in what densities. Species distribution modeling (SDM) provides a cost-effective means of identifying potential DSCS habitat over large areas to inform these management decisions and data collection. Here we describe good practices for DSCS SDM, especially in the context of data collection and management applications. Managers typically need information regarding DSCS encounter probabilities, densities, and sizes, defined at sub-regional to basin-wide scales and validated using subsequent, targeted data collections. To realistically achieve these goals, we suggest analysts: 1) integrate available data sources in SDMs including fine-scale visual sampling and broad-scale resource surveys (e.g., fisheries trawl surveys); and 2) include environmental predictor variables representing multiple spatial scales, model residual spatial autocorrelation, and quantify prediction uncertainty. When possible, models fitted to presence-absence and density data are preferred over models fitted only to presence data, which are difficult to validate and can confound estimated probability of occurrence or density with sampling effort. Ensembles of models can provide robust predictions, while multi-species models leverage information across taxa and facilitate community inference. To facilitate the use of models by managers, predictions should be expressed in units that are widely understood and validated at an appropriate spatial scale using a sampling design that provides strong statistical inference. We present three case studies for the Pacific Ocean that illustrate good practices with respect to data collection, modeling, and validation; these case studies demonstrate it is possible to implement our good practices in real-world settings.

Frontiers in Marine Science↗