Geology topics

Andrew O’Malley

Publications and source records attributed to Andrew O’Malley.

6 recordsLinked to original sources

USGS2023

Effect of straying, reproductive strategies, and ocean distribution on the structure of American shad populations

The use of species distribution models has proliferated, providing insights for sustainable management of migratory species in a globally changing environment. However, many of these models are based on statistical relationships developed from historical conditions that may not perform well under changing or even analogous conditions caused by climate change. In this paper, we used a mechanistic species distribution model called GR3D (Global Repositioning Dynamics for Diadromous Fish Distribution) to examine the integrated dynamics of American shad ( Alosa sapidissima ) populations across their native range along the Eastern U.S. coast, where the species demonstrates latitudinal variations in life histories and reproductive strategies. The initial design of the model was adapted to incorporate region-specific parameterization to fit the species ecology. Then, a sensitivity analysis was performed to test the influences of uncertain processes regarding American shad distribution at sea, straying and reproduction on key characteristics of the species distribution. The sensitivity analysis showed the influence of the Allee effect (i.e., “depensatory” process) and the homing rate (i.e., fidelity to the breeding sites) on the probability of presence and abundances among catchments and metapopulations estimated by the model. Contrary to the homing rate, the distance of straying did not change the estimated number of metapopulations or abundances. Homing strength, however, was quite influential. The integration of complex migration patterns during the marine phase (i.e., wintering and summering offshore areas) provided more likely estimates of the species' overall distribution. Overall, our study illustrated the utility of incorporating factors governing the large-scale distribution of migratory species to improve local management.

Ecosphere↗

USGS2020

Balancing fish-energy-cost tradeoffs through strategic basin-wide dam management

Dam management often involves tradeoffs among hydropower generation capacity, environmental impacts, and project costs. However, our understandings of such tradeoffs under a full range of dam management options remain limited, which hinders our ability to make sound and scientifically defensible dam management decisions. In order to assess the scope for theoretical tradeoffs, a dynamic model of hydropower production, important fish populations, and project costs was developed using the system dynamics modeling technique. Three dam management options investigated the likely outcomes from: dam removal, fishway installation (e.g., pool-and-weir, Denil, and fish lift), and no action. The model was applied to the Penobscot River located in Maine, United States as a proof of concept, where recent actions (i.e., dam removal and fishway construction) have been undertaken. We modeled theoretical influence of these actions on four significant sea-run fish (alewife Alosa pseudoharengus , American shad Alosa sapidissima , Atlantic salmon Salmo salar , and sea lamprey Petromyzon marinus ) by developing an index of spawner population potential based on population models for each species. Optimal dam management solutions may maximize spawner population potential and energy production to 60-62% of maximum achievable values while limiting the project cost to US$17 million (44% of the maximum value). Our results demonstrate that basin-scale management strategies may increase the migratory fish restoration while preserving hydropower generation capacity. Diversification of management options (e.g., combination of fishway installations, dam removals, and generation capacity) may increase the efficacy of strategic fish-energy-cost tradeoffs.

Maine↗

USGS2019

Managing dams for energy and fish tradeoffs: What does a win-win solution take?

Management activities to restore endangered fish species, such as dam removals, fishway installations, and periodic turbine shutdowns, usually decrease hydropower generation capacities at dams. Quantitative analysis of the tradeoffs between energy production and fish population recovery related to dam decision-making is still lacking. In this study, an integrated hydropower generation and age-structured fish population model was developed using a system dynamics modeling method to assess basin-scale energy-fish tradeoffs under eight dam management scenarios. This model ran across 150 years on a daily time step, applied to five hydroelectric dams located in the main stem of the Penobscot River, Maine. We used alewife ( Alosa pseudoharengus ) to be representative of the local diadromous fish populations to link projected hydropower production with theoretical influences on migratory fish populations on the model river system. Our results show that while the five dams can produce around 427 GWh/year of energy, without fishway installations they would contribute to a 90% reduction in the alewife spawner abundance. The effectiveness of fishway installations is largely influenced by the size of reopened habitat areas and the actual passage rate of the fishways. Homing to natal habitat has an insignificant effect on the growth of the simulated spawner abundance. Operating turbine shutdowns during alewives' peak downstream migration periods, in addition to other dam management strategies, can effectively increase the spawner abundance by 480–550% while also preserving 65% of the hydropower generation capacity. These data demonstrate that in a river system where active hydropower dams operate, a combination of dam management strategies at the basin scale can best balance the tradeoff between energy production and the potential for migratory fish population recovery.

Maine↗

USGS2018

Does what go up also come down? Using a recruitment model to balance alewife nutrient import and export

Migrating adult Alewives Alosa pseudoharengus are a source of marine-derived nutrients on the East Coast of North America, importing nitrogen and phosphorus into freshwater habitats. Juvenile migrants subsequently transport freshwater-derived nutrients into the ocean. We developed a deterministic model to explore the theoretical nutrient dynamics of Alewife migrations at differing spawner abundances. Net nutrient balance was calculated relative to these abundances along the spawner–recruit curve. The ecological consequences of these subsidies in a particular watershed depend on the magnitude of adult escapement relative to the habitat’s carrying capacity for juveniles. At low escapement levels and assuming complete habitat access, the number of recruits produced per spawner was high and juvenile nutrient export dominated. At high escapement levels, fewer recruits were produced per spawner because recruitment is density dependent. As a result, adult nutrient import dominated. At varying levels of freshwater productivity and fisheries mortality for upstream spawners, this trend remained the same while the magnitude of the endpoints changed. Productivity level was the major determinant of export, while fisheries mortality had the strongest effect on adult import. The dynamics of this nutrient trade-off are important for managers to consider as a recovering population will likely shift from net export to net import as escapement increases. This transition will be sensitive to both harvest rates and to fish passage efficacy at dams and other barriers.

Marine and Coastal Fisheries: Dynamics, Management↗

USGS2017

Size and age structure of anadromous and landlocked populations of Rainbow Smelt

Rainbow Smelt Osmerus mordax are widely distributed in both anadromous and landlocked populations throughout northeastern North America; abundance, size at age, and maximum size vary widely among populations and life histories. In the present study, size at age, von Bertalanffy growth parameters, population age distributions, and precision and bias in age assessment based on scales and sectioned otoliths were compared between ecotypes and among populations of Rainbow Smelt. To compare the ecotypes, we collected spawning adults from four anadromous and three landlocked populations in Maine during spring 2014. A significant bias was identified in only one of four scale comparisons but in four of seven otolith comparisons; however, a comparable level of precision was indicated. Anadromous populations had larger and more variable size at age and von Bertalanffy growth parameters than landlocked fish. Populations were composed of ages 1–4; six populations were dominated by age-2 or age-3 individuals, and one population was dominated by age-1 fish. These data suggest the presence of considerable plasticity among populations. A latitudinal gradient was observed in the anadromous Rainbow Smelt, which may show signs of population stress at the southern extent of their distribution.

North American Journal of Fisheries Management↗

USGS2014

Growth and smolting in lower-mode Atlantic Salmon stocked into the Penobscot River, Maine

Restoration of Atlantic Salmon Salmo salar in Maine has relied on hatchery-produced fry and smolts for critical stocking strategies. Stocking fry minimizes domestication selection, but these fish have poor survival. Conversely, stocked smolts have little freshwater experience but provide higher adult returns. Lower-mode (LM) fish, those not growing fast enough to ensure smolting by the time of stocking, are a by-product of the smolt program and are an intermediate hatchery product. From 2002 to 2009, between 70,000 and 170,000 marked LM Atlantic Salmon were stocked into the Pleasant River (a tributary in the Penobscot River drainage, Maine) in late September to early October. These fish were recaptured as actively migrating smolts (screw trapping), as nonmigrants (electrofishing), and as returning adults to the Penobscot River (Veazie Dam trap). Fork length (FL) was measured and a scale sample was taken to retrospectively estimate FL at winter annulus one (FW1) using the intercept-corrected direct proportion model. The LM fish were observed to migrate as age-1, age-2, and infrequently as age-3 smolts. Those migrating as age-1 smolts had a distinctly larger estimated FL at FW1 (>112 mm) than those that remained in the river for at least one additional year. At the time of migration, age-2 and age-3 smolts were substantially larger than age-1 smolts. Returning adult Atlantic Salmon of LM origin had estimated FLs at FW1 that corresponded to smolt age (greater FL for age 1 than age 2). The LM product produces both age-1 and age-2 smolts that have greater freshwater experience than hatchery smolts and may have growth and fitness advantages. The data from this study will allow managers to better assess the probability of smolting age and manipulate hatchery growth rates to produce a targeted-size LM product.

Maine↗