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Alan Kirschbaum

Publications and source records attributed to Alan Kirschbaum.

2 recordsLinked to original sources

Incorporating location uncertainty improves inference with stop-level North American Breeding Bird Survey data

Ecological models should account for uncertainty to be most effective and useful. Yet, uncertainty from model covariates—unlike that from other sources, such as sampling error or process variability—is seldom explicitly incorporated. This can cause underestimates of uncertainty to cascade through model parameter estimates, predictions, and downstream uses. Burner et al. proposed a method for quantifying uncertainty in covariates and incorporating it into models using informative Bayesian priors. This method was applied to stop-level Breeding Bird Survey (BBS) analyses, where land cover uncertainty at each stop arises from substantial stop location uncertainty. A limited validation of model-estimated land cover, using stops with known locations, indicated the method’s potential effectiveness, but it was not rigorously evaluated. We conduct a robust simulation-based test, generating stop locations, extracting land cover, and simulating bird communities across 210 BBS routes in the upper Midwest. We compare 3 models: a “known” model with true land cover, a “naive” model assuming consistent 800-m stop spacing, and a “full” model using informative priors to estimate land cover. Species parameter estimates and predicted prevalence patterns across gradients in land cover from the full model approached those of the known model and were substantially closer to the true values used in simulations relative to those from the naive model. Naive model parameters were more biased relative to the other models, and credible intervals of predicted species prevalence rarely included the true simulated values. The full model also produced land cover covariate estimates closer to true simulation values relative to the mean informative priors. Our results show that, for the BBS, informative priors enable more accurate stop-level analyses despite location uncertainty. In contrast, naive models that ignore this uncertainty yield poor inferences. More broadly, we demonstrate empirically the utility of informative priors to account for covariate uncertainty in ecological models.

Michigan, Minnesota, Wisconson↗

Informative priors can account for location uncertainty in stop-level analyses of the North American Breeding Bird Survey (BBS), allowing fine-scale ecological analyses

Ecological inferences are often based on the locations at which species are present, but many species records have substantial uncertainty in spatial metadata, limiting their utility for fine-scale analyses. This is especially prevalent in historical records such as museum specimens, and in some citizen-science data. For example, the North American Breeding Bird Survey (BBS) has 55+ years of bird data from regular transects (“routes”) across the continent but was not designed to capture the spatial component of point count events, limiting analyses of species-habitat relationships for which it would otherwise be well suited. We present a new methodology for quantifying location uncertainty in BBS records using digitized estimated stop locations, deriving the corresponding environmental covariate uncertainty distributions, and incorporating this information into hierarchical species distribution models using informative Bayesian priors. This approach allows for estimation of species–environment relationships in a way that fully accounts for underlying spatial uncertainty. We quantify stop-location uncertainty in BBS data across the central United States, model bird–land cover relationships in the upper Midwest, and validate our method by comparing posterior land cover estimates to known covariate values for a subset of GPS-digitized stop locations. We provide code for implementing this method in R. Posterior land cover estimates (forest, grass/hay, and developed land cover), based on our informative priors, were highly correlated with known land cover values from GPS-digitized stop locations. Our approach thus makes it possible to responsibly leverage large historic and citizen science databases, such as the BBS, for fine-scale ecological analyses.

Ornithological Applications↗