Geology topics

Aaron R. Cupp

Publications and source records attributed to Aaron R. Cupp.

At least 19 recordsLinked to original sources

USGS2025

Movement patterns of invasive red swamp crayfish vary with sex and environmental factors

Invasive species disproportionately invade freshwater ecosystems, threatening biodiversity. Defining when, where, and why aquatic invasive species move can help inform management strategies, yet the movement ecology of some of the most pervasive invasive species remains unknown. Red swamp crayfish ( Procambarus clarkii ; RSC) are the most widespread invasive crayfish and negatively affect ecosystems worldwide. We employed high-dimensional acoustic telemetry to investigate the movement patterns of 24 individual RSC across three months in an invaded water body. We assessed the effects of various extrinsic factors, such as time of day, temperature, precipitation, and proximity to the water’s edge, along with intrinsic factors, such as sex, reproductive form, and size, at different scales, including movement steps, range distribution, and behavioral states. We found that movement patterns across all scales were overwhelmingly driven by sex and reproductive form. Furthermore, RSC showed increased overall activity at night and near the water’s edge. By establishing baseline movement patterns and identifying key contributing factors, these findings provide a foundation for the development of adaptive management strategies for controlling invasive RSC populations.

Michigan↗

USGS2024

Evaluation of a carbon dioxide fish barrier through numerical modelling

The Chicago Area Waterway System (CAWS) is a potential route for the migration of aquatic invasive species from the Mississippi River Basin into the Great Lakes. Electric dispersal barriers were installed in the Chicago Sanitary Ship Canal, within CAWS, to prevent invasive fish from reaching the Great Lakes. Despite the high efficiency of these barriers, occasional maintenance events create a vulnerability that fish can exploit to access the Great Lakes. This study aimed to assess the feasibility of a carbon dioxide (CO 2 ) infusion system to deter fish during the maintenance of the electric barriers. An algebraic slip mixture model was implemented in the OpenFOAM solver to represent the underwater CO 2 bubble plume and predict the concentration of dissolved CO 2 in the canal. Simulations under three canal flowrates and two sparger systems were conducted assuming a constant gas flowrate. Numerical results indicate that, for all simulated conditions, the CO 2 concentration is not fully mixed creating passageways that invasive fish could potentially use to migrate upstream. Injecting 4-mm bubbles induces two large-scale recirculations that are expected to synergistically improve fish avoidance. On the other hand, injection of 20 μ "> μ m bubbles results on almost immediate dissolution with minimal effect on the flow pattern. To improve effectiveness, a gas pulse system was proposed and numerically evaluated. Based on the simulations, this system not only extends the operation of the CO 2 barrier but also increases efficiency creating CO 2 gradients that can promote a more responsive behaviour from fish. Moreover, the pulse concept mitigates potential effect of elevated CO 2 downstream from the treated area.

Illinois↗

USGS2024

Silver carp experience metabolic and behavioral changes when exposed to water from the Chicago Area Waterway

One of the hallmarks of invasive species is their propensity to spread. Removing an invasive species after establishment is virtually impossible, and so considerable effort is invested in preventing the range expansion of invaders. Silver carp ( Hypophthalmichthys molitrix) were discovered in the Mississippi River in 1981 and have spread throughout the basin. Despite their propensity to expand, the ‘leading edge’ in the Illinois River has stalled south of Chicago and has remained stable for a decade. Studies have indicated that contaminants in the Chicago Area Waterway System (CAWS) may be contributing to the lack of upstream movement, but this hypothesis has not been tested. This study used a laboratory setting to quantify the role of contaminants in deterring upstream movement of silver carp within the CAWS. For this, water was collected from the CAWS near the upstream edge of the distribution and transported to a fish culture facility. Silver carp and one native species were exposed to CAWS water, and activity, behavior, avoidance, and metabolic rates were quantified. Results showed that silver carp experience an elevated metabolic cost in CAWS water, along with reductions in swimming behavior. Together, results indicate a role for components of CAWS water at deterring range expansion.

Scientific Reports↗

USGS2024

Multi-scale effects of behavioral movement deterrents on invasive carp metapopulations

Behavioral deterrents of among-pool movement represent a promising tool for controlling invasive fish populations. To date, much of the research in this area has been focused on the direct effectiveness of different methods of deterrence. However, the effect of these structures on populations in spatially complex habitats is unknown. We combine a metacommunity model with movement data of two invasive species (bighead carp and silver carp) in a large river to assess local and river-wide scale population outcomes of deterrent locations. We calculated (1) which potential deterrent locations are most effective at reducing the growth at the invasion front (2) the river-scale population effects at each location, and (3) what, if any, are the risks imposed by altering the current spatial dynamics. We found that the effects on the population dynamics at the invasion front varied with the location of deterrents, ranging from near zero to effects equal to the reduction in an individual’s movement across the deterrent. The river-scale population growth rate was slightly increased by all potential deterrent placements because the deterrents tended to concentrate more of the river-scale population into pools with the highest recruitment rates. The short-term, transient dynamics followed a strictly decreasing pattern after deterrent placement suggesting no additional short-term risk. These results suggest that deterrents can be an effective and low-risk intervention for the control of invasive carp, although the population level effect will depend on the interaction of the traits and behavior of the species with the physical character and spatial structure of the habitat.

Illinois↗

USGS2024

Summary of data collected during field efficacy trials of florfenicol and oxytetracycline dihydrate in controlling mortality in walleye (Sander vitreus) because of motile Aeromonad infections

Motile Aeromonad septicemia is a substantial concern during fish propagation and can be catastrophic for fish hatcheries. We tested the efficacy of two different drugs (florfenicol and oxytetracycline) offered with feed as possible treatment options to control mortality because of motile Aeromonad infection. We offered top-coated medicated feeds to hatchery-reared Sander vitreus (walleye) that were naturally infected with motile Aeromonad infection during two separate trials in 2011 and 2012. Substantial walleye mortality occurred before positive clinical outcomes from the medicated feed treatments were observed, and additional treatment measures were taken by hatchery staff to mitigate further mortality in their walleye production tanks. This report summarizes the data that were collected during medicated feed trials. Statistical inferences on treatment efficacy are not included because of the confounding treatments and possible secondary pathogens present throughout this study.

Open-File Report↗

USGS2024

Upstream experience and experimental translocation of invasive bigheaded carps results in increased upstream passage success at a navigation lock in a large river

Fish movements in regulated rivers can be challenging to study because anthropogenic modifications, such as locks and dams, can influence animal behavior. Upper Mississippi River Lock and Dam 19 (LD 19), for example, is an invasive carp movement bottleneck due to an impassable dam. Upstream fish passage at LD19 is restricted to the lock chamber, making it an optimal location to test invasive fish deterrents that could limit further range expansion. Evaluating the effectiveness of experimental deterrents requires baseline knowledge of fish movements and suitable sample sizes of fish encountering the deterrents to ensure adequate statistical power. Some evidence indicates fish with prior upstream experience may return upstream or challenge potential deterrents at a higher rate than fish without such experience. To test how previous upstream experience could increase the rate at which fish moved upstream through a navigation lock chamber, we compared upstream passage through LD 19 using bigheaded carp captured below the dam (downstream-origin) and two groups of bigheaded carp captured upstream from the dam: those that swam downstream on their own volition (upstream-origin fish) and those that were captured upstream and translocated downstream of LD 19 (translocated upstream-origin). Translocated upstream-origin carp demonstrated the highest rate of upstream passage, with 59% of the fish detected downstream from LD 19 passing upstream during our study. In contrast, downstream-origin carp made no upstream passages over 2 years. Fish origin was shown to influence upstream passage success. This may be an important consideration for fish passage studies and deterrent evaluations.

Illinois, Iowa↗

USGS2023

Assessing the suitability of YY males and ZZ females as an invasive species population control method across life histories

Natural resource managers use tools to control invasive species. In theory, stocking YY males or ZZ females would allow managers to skew sex ratios until populations collapse. In combination with other suppression methods, such as removal, this approach could be incorporated into Integrated Pest Management plans. For example, fishery managers have stocked YY males to control isolated non-native brook trout ( Salvelinus fontinalis ) populations. However, life histories and demographic factors (e.g., lifespans) vary across species and could affect the feasibility of skewing sex ratios as an effective control strategy for a given population. Likewise, some species may have sex determinations that do not allow population control through sex-skewing methods. We compared five representative aquatic invasive species with global invasion ranges for potential control by skewing the sex ratio through closed population simulations: red swamp crayfish (Procambarus clarkii ), zebra mussels ( Dreissena polymorpha ), lake trout ( Salvelinus namaycush) , silver carp ( Hypophthalmichthys molitrix ), and Nile tilapia ( Oreochromis niloticus ). We determined that Nile tilapia, red swamp crayfish, and zebra mussels would be the most suitable to control through skewing the sex ratio assuming appropriate sex determination exists in the species. Lake trout could be eliminated by stocking YY males but would require either long stocking periods or high stocking numbers because of the long lifespan of the species. Silver carp populations were more difficult to crash because they live longer and produce many recruits. Broadly, these patterns demonstrated that short lived species lend themselves to control by skewing the sex ratio.

Biological Invasions↗

USGS2023

Application of the technology readiness levels framework to natural resource management tools

Technology advancements in fisheries science can provide useful tools to support natural resource management and conservation. However, new technologies may also present challenges for decision makers due to the lack of a standardized process to assess technologies for consideration within management plans. Future technology development in fishery and water resources could benefit from a framework that assigns an appropriate technology development stage and defines the readiness for implementation. Technology Readiness Levels (TRL) are one established research and development scale used throughout engineering and related disciplines that could be applied to natural resource management tools. The TRL assess the maturity of a technology from nascent idea through a fully developed technology. Steps within this scale could provide a general framework for researchers to follow when planning and conducting studies, while similarly providing a standard scale for resource managers to assess readiness for technology transfer and implementation. The goal of this paper is to describe TRL in the context of natural resource management tools and offer this existing framework as one option to facilitate communication between researchers and managers.

Fisheries↗

USGS2023

Movement and behavioral states of common carp (Cyprinus carpio) in response to a behavioral deterrent in a navigational lock

Freshwater ecosystems are some of the most affected by biological invasions due, in part, to the introduction of invasive carp worldwide. Where carp have become established, management programs often seek to limit further range expansion into new areas by reducing their movement through interconnected rivers and waterways. Lock and dams are important locations for non-physical deterrents, such as carbon dioxide (CO 2 ), to reduce unwanted fish passage without disrupting human use. The purpose of this study was to evaluate the behavioral responses of common carp ( Cyprinus carpio ) to non-physical deterrents within a navigation structure on the Fox River, Wisconsin. Acoustic telemetry combined with hidden Markov models (HMMs) was used to analyze variation in carp responses to treatments. Outcomes may inform CO 2 effectiveness at preventing invasive carp movement through movement pinch-points.

Wisconsin↗

USGS2023

Efficacy of hydrogen peroxide to reduce Gyrodactylus species infestation density on four fish species

Objective The ability to effectively treat parasitic infestations of fish is of high importance for fish culture facilities. However, tools or approved therapies for treating infestations on fish are limited. This paper summarizes results from four separate clinical field studies that evaluated the efficacy of hydrogen peroxide (H 2 O 2 ; 35% PEROX-AID) for reducing Gyrodactylus spp. infestation density. Methods Three species of Gyrodactylus were studied ( G. salmonis , hosts: Brook Trout Salvelinus fontinalis and Lake Trout S. namaycush ; G. freemani , host: Yellow Perch Perca flavescens ; G. hoffmani , host: Fathead Minnow Pimephales promelas ) before and after the application of immersion H 2 O 2 therapy. Result Parasite density was significantly reduced for each parasite × host combination to which H 2 O 2 therapy was applied. Two clinical field studies in salmonids were found to demonstrate substantial effectiveness that enabled 35% PEROX-AID approval. Conclusion Further assessments of Gyrodactylus spp. could expand the use of H 2 O 2 for controlling these parasites in aquaculture. Specifically, H 2 O 2 was effective at all levels tested (50 or 75 mg H 2 O 2 /L for 60 min for the Yellow Perch and Fathead Minnow clinical field studies; 100 or 150 mg H 2 O 2 /L for 30 min regardless of salt pre-treatment for the Brook Trout study; and 100 mg H 2 O 2 /L for 30 min or 50 mg H 2 O 2 /L for 60 min for the Lake Trout study).

Journal of Aquatic Animal Health↗

USGS2023

Assembly methods for an external acoustic transmitter attachment device for fish telemetry studies

The purpose of this report is to describe the assembly methods for an external acoustic transmitter attachment device that can be used during fish telemetry studies. External attachment is a simple procedure that can limit handling and reduce recovery times on fish. This report provides step-by-step directions to assemble devices; this assembly method can be used for telemetry studies where external transmitter attachment is needed. General guidelines to attach transmitters to fish also are included.

Techniques and Methods↗

USGS2023

Efficacy of florfenicol and oxytetracycline administered in feed to control cisco mortality associated with Aeromonas salmonicida infections

Two medications (one with florfenicol and one with oxytetracycline) that are approved in the United States to control mortality due to furunculosis associated with Aeromonas salmonicida were assessed to determine their efficacy in medicated feeds to treat A. salmonicida -infected Cisco (also known as Lake Herring) Coregonus artedi . Cisco were subjected to static infection baths containing A. salmonicida or a sham control and then were distributed to replicate test tanks within four treatment groups: (1) fish infected with A. salmonicida and treated with 15 mg florfenicol·kg body weight (BW) −1 ·d −1 , (2) fish infected with A. salmonicida and treated with 83 mg oxytetracycline·kg BW −1 ·d −1 , (3) fish infected with A. salmonicida and treated with a nonmedicated control feed, and (4) uninfected fish treated with a nonmedicated control feed. Medicated and comparative nonmedicated feed rations were administered at 2% BW/d for 10 consecutive days in accordance with the U.S. Food and Drug Administration-approved drug label, followed by a 7-d postdosing observation period using only nonmedicated feed. Cisco that were infected with A. salmonicida and treated with florfenicol (79% survival) and oxytetracycline (85% survival) had significantly higher survival than A. salmonicida -infected fish that received no medicated treatment (3% survival). No statistical difference in Cisco survival between the two medicated feed types was found. Aeromonas salmonicida was not detected in the kidney tissue of any surviving fish treated with medicated feeds at 7 d postdosing using quantitative PCR analysis. Overall, this study demonstrated that florfenicol- and oxytetracycline-medicated feeds were effective A. salmonicida treatments for Cisco. Outcomes may inform ongoing propagation efforts for Cisco restoration within the Great Lakes basin.

North American Journal of Aquaculture↗

USGS2023

Application of electricity and underwater acoustics to clear fish from a navigation lock during maintenance

The presence of fish within navigation locks can introduce an environmental challenge for construction crews when maintenance is required. This study examined the effectiveness of a dual-deterrent fish herding technique using electricity and acoustic stimuli to reduce the abundance of fish within a navigation lock before a scheduled dewatering for maintenance. Fixed-location multi-beam imaging sonar was used to evaluate fish per minute (FPM) detections near the lock entrance before, during, and after the herding effort. Standardized mobile side-scan sonar surveys were also conducted before and after the herding to examine fish presence throughout the entire lock. Collectively, a 73% reduction in fish targets detected by side-scan sonar and a 43% reduction in FPM detected by imaging sonar were observed following the herding technique. Post-fish herding, 88% reduction in FPM >400mm and a 35% reduction in FPM <400mm were observed. Fish abundance within the lock chamber was reduced and did not result in construction delays, which was problematic and costly during previous dewatering events. Since data from this study are limited to a single lock dewatering and fish clearing event, caution should be taken with the extrapolation of these results. However, the applied methods show promise and may inform future fish clearing efforts to aid lock maintenance.

Illinois↗

USGS2023

Carbon dioxide (CO2) gas and eDNA monitoring as tools for eradicating invasive fish from anchialine pools in Hawai‘i

Invasive fish can profoundly affect communities they invade. In Hawai‘i, invasive fishes have become established in many anchialine pools, threatening the persistence of resident invertebrates, including several endangered species. Tools to eradicate invasive fishes from these pools are lacking. This study tested the efficacy of carbon dioxide (CO2) gas diffused into anchialine pool water as a method to eradicate invasive Mozambique tilapia (Oreochromis mossambicus), guppies (Poecilia reticulata), and western mosquitofish (Gambusia affinis). We first conducted aquarium trials to identify how these fishes were affected by elevated CO2 and the concomitant reduction in pH. We then carried out field trials in pools containing these fish in one pool each at two national historical parks on the Island of Hawai‘i during July 2021–January 2022. We also developed environmental DNA (eDNA) protocols to detect fish that may have survived CO2 treatments. The effect of CO2 on fish behavior varied among species; at pH 5.3 (CO2 = 255 mg/L) for tilapia and 5.0 (CO2 = 488 mg/L) for tilapia, guppies, and mosquitofish, all generally lost their ability to swim, showed slow or no gill movement, and altered their position in the water column. No tilapia survived the trials (n = 4 and 6 individuals at pH 5.3 and 5.0, respectively). In contrast, 41.7% (n = 12) of adult guppies and 66.7% (n = 12) of adult mosquitofish survived treatment at pH 5.0. In the field we were unable to reduce anchialine pool water pH below 5.7. Regardless, we were able to eradicate tilapia from one pool over four sequential treatments. Post-treatment eDNA assessments supported visual surveys, confirming our results. We were not able to eradicate guppies and mosquitofish. Results from this study show that CO2 can be an effective tool for eradicating invasive tilapia from anchialine pools, and post-treatment eDNA assessments can provide managers with a method for evaluating the success of eradication efforts.

Hawaii↗

USGS2023

Bridging the gap between mathematical biology and undergraduate education using applicable natural resource modeling

Mathematical biology is a wide field of study with many venues that undergraduate students can access through research. However, the topics of study for these students can be overwhelming, and many topics of study yield either only trivial results or abstract outcomes that are nonintuitive and diffcult to understand. We have used natural resource modeling, and more specifically, a partnership between academic researchers and federal scientists, as a bridge between undergraduate research and mathematical biology. Our collaboration is an interdisciplinary team that combines biology, mathematics, and statistics professors with government research scientists. As a team, we have mentored students through opportunities such as a Research Experiences for Undergraduates and other projects. In this article, we provide an overview of how we develop questions for undergraduates and outline two case studies, both of which resulted in peer reviewed journal articles. Last, we describe how we also transfer the results from these undergraduate projects to resource managers so the results may be applied to real world problems.

Letters in Biomathematics↗

USGS2022

Field application of carbon dioxide as a behavioral control method for invasive red swamp crayfish (Procambarus clarkii) in southeastern Michigan water retention ponds

This study evaluated carbon dioxide (CO 2 ) injected into water as a possible behavioral stimulant to enhance capture and removal of invasive red swamp crayfish (RSC, Procambarus clarkii [Girard, 1852]) from a retention pond in southeastern Michigan. Objectives of this study were (1) to determine if target CO 2 concentrations were attainable within the infested pond and (2) to determine if CO 2 treatment was effective to push RSC either towards shorelines or onto dry land, where they could be collected and removed. Carbon dioxide was applied directly into one treatment pond (about [~]2,500 cubic meters) in Novi, Michigan. Two nearby ponds in Livonia, Mich., were used as untreated control ponds. Crayfish removal efficiency was evaluated in all ponds using baited traps and shoreline surveys. Results showed that the CO 2 treatment pond reached its target concentration of greater than (>) 200 milligrams per liter (mg/L) of CO 2 , a benchmark determined from previous laboratory studies, approximately 11 hours after injection started, and maintained concentrations between 200 and 351 mg/L of CO 2 for about 2.5 days. During treatment, some emergent crayfish were observed near influent culverts around the pond, which possibly brought about a behavioral response. However, the number of individuals and crayfish observations were minimal and infrequent. Crayfish continued to be removed throughout CO 2 treatment with baited traps and perimeter surveys, but differences in catch rates between the treatment and control ponds were not apparent and confounded by a temporal decline in catch rates across all ponds. Overall, this study demonstrated that open-water treatment applications with CO 2 are possible, but its effectiveness to enhance RSC removal was unclear because of the limited crayfish observations.

Michigan↗

USGS2022

Performance of a carbon dioxide injection system at a navigation lock to control the spread of aquatic invasive species

Natural resource agencies need effective strategies to control the spread of aquatic invasive species (AIS) such as invasive fish, which can expand their range using rivers as hydrological pathways to access new areas. Lock and dam structures within major rivers are prospective locations to deploy techniques, such as carbon dioxide ( CO 2 ) infusion into lock water, that could impede upstream AIS migration without disrupting vessel passage and lock operation. The current pesticide label for CO 2 in the United States allows injections of 100–150 mg/LCO 2 as a behavioral deterrent treatment for invasive carps. This research describes the first operationalizing and testing of a CO 2 injection and manifold distribution system at a 1,548,000-L navigation lock chamber on the Fox River near Kaukauna, Wisconsin, USA. Two chemical distribution manifolds located on the floor and wall of the chamber were independently tested to quantify mixing time, mixing homogeneity, injection efficiency, and operational power requirements under a range of operating parameters. Both manifold configurations were able to meet most performance benchmarks established during previous fish behavior studies. Certain limitations were exhibited and quantified for both manifold configurations in terms of mixing homogeneity and operational power. This research details the design and performance of CO2-to-water infusion systems that could be used to deter the spread of AIS at navigation pinch-points. These results may inform future CO 2 system designs and operating conditions to support natural resource management plans to limit the spread of AIS.

Wisconsin↗

USGS2021

Decision analysis of barrier placement and targeted removal to control invasive carp in the Tennessee River Basin

Controlling range expansion of invasive carp (specifically Hypophthalmichthys spp.) on the Tennessee River is important to conserve the ecological and economic benefits provided by the river. We collaborated with State and Federal agencies (the stakeholder group) to develop a decision framework and decision support model to evaluate strategies to control carp expansion in the Tennessee River. Using this decision framework, we assessed the efficacy of various barrier strategies (technologies and locations) on reducing bigheaded carp (Hypophthalmichthys nobilis [bighead carp] and Hypophthalmichthys molitrix [silver carp]) relative abundance under different patterns and magnitudes of population growth and movement. We also assessed whether or not these strategies induced tradeoffs between reducing bigheaded carp relative abundance and other considerations for public satisfaction, effects on lock operation, and native species. For the purpose of comparing options to control carp in a quantitative framework, we codeveloped a carp population dynamics model with the stakeholder group. We then used the model to compare invasive carp management options within the Tennessee River system. The actions we considered included barrier placement at lock and dam systems and targeted removal through harvest, which were believed to impede upstream carp spread and establishment. To account for the uncertainty in carp population growth and movement rates, the group developed four population models that varied in the underlying population dynamics and population growth rates. The models affected population growth through either the stock-recruitment relation or intrinsic density-dependent growth rate. We then tasked the stakeholder group to test various strategies using the model. We then developed a more formal optimization framework and solved for strategies that performed well under scenarios of barrier effectiveness, movement rate, recruitment frequency, fishing mortality, and variation in population growth rate. The results of our qualitative and quantitative analyses indicated that strategies designed to first protect reservoirs just above the leading edge of carp invasion by installing barriers and removing fish below that point would perform best; however, this depended on barrier effectiveness. When barrier effectiveness was high, simply cutting off the presumed source of carp and blocking the leading the edge was enough to stop carp invasion; however, lower effectiveness meant that more barriers would be needed to slow, but not completely stop, carp invasion. We discuss what these findings mean in terms of future monitoring and management efforts to reduce the potential for expanding carp invasion.

Kentucky↗