Geology topics

A.M. Farag

Publications and source records attributed to A.M. Farag.

17 recordsLinked to original sources

USGS2011

Water quality in three creeks in the backcountry of Grand Teton National Park, USA

This study was conducted in Grand Teton National Park during the summers of 1996 and 1997 to investigate the water quality in two high human use areas: Garnet Canyon and lower Cascade Canyon. To evaluate the water quality in these creeks, fecal coliform, Giardia lamblia , coccidia, and microparticulates were measured in water samples. No evidence of fecal coliform, Giardia lamblia , or coccidia, was found in Garnet Creek. The water quality and general water chemistry of Garnet Creek was similar to the reference site. No Giardia lamblia or coccidia were found in Cascade Creek, but fecal coliforms were present. The isolated colonies of Escherichia coli from Cascade Creek matched the ribosome patterns of avian, deer, canine, elk, rodent, and human coliforms.

Wyoming↗

USGS2009

Trout density and health in a stream with variable water temperatures and trace element concentrations: does a cold-water source attract trout to increased metal exposure?

A history of hard-rock mining has resulted in elevated concentrations of heavy metals in Prickly Pear Creek (MT. USA). Remediation has improved water quality; however, dissolved zinc and cadmium concentrations still exceed U.S. Environmental Protection Agency water-quality criteria. Physical habitat, salmonid density, fish health, and water quality were assessed, and metal concentrations in fish tissues, biofilm, and macroinvertebrates were determined to evaluate the existing condition in the watershed. Cadmium, zinc, and lead concentrations in fish tissues, biofilm, and invertebrates were significantly greater than those at the upstream reference site and an experimental site farther downstream of the confluence. Fish densities were greatest, and habitat quality for trout was better, downstream of the confluence, where water temperatures were relatively cool (16??C). Measures of fish health (tissue metal residues, histology, metallothionein concentrations, and necropsies), however, indicate that the health of trout at this site was negatively affected. Trout were in colder but more contaminated water and were subjected to increased trace element exposures and associated health effects. Maximum water temperatures in Prickly Pear Creek were significantly lower directly below Spring Creek (16??C) compared to those at an experimental site 10 km downstream (26??C). Trout will avoid dissolved metals at concentrations below those measured in Prickly Pear Creek; however, our results suggest that the preference of trout to use cool water temperatures may supersede behaviors to avoid heavy metals. ?? 2009 SETAC.

Environmental Toxicology and Chemistry↗

USGS2007

Effects of acclimation on the toxicity of stream water contaminated with zinc and cadmium to juvenile cutthroat trout

We investigated the influence of acclimation on results of in situ bioassays with cutthroat trout in metal-contaminated streams. Cutthroat trout (Oncorhynchus clarki) were held for 21 days (1) in live containers at a reference or "clean" site having dissolved metals near detection limits (0.01 ??g/L cadmium [Cd] and 2.8 ??g/L zinc [Zn]; hardness 32 mg/L as CaCO3) and (2) at a site in a mining-impacted watershed having moderately increased metals (0.07 ??g/L Cd and 38 to 40 ??g/L Zn; hardness 50 mg/L as CaCO3). The 96-hour survival of each treatment group was then tested in situ at five sites from September 5 to 9, 2002, and each group exhibited a range of metal concentrations (0.44 to 39 ??g/L arsenic [As], 0.01 to 2.2 ??g/L Cd, and 0.49 to 856 ??g/L Zn). Survival was 100% at three sites for both treatments. However, a higher percentage of metal-acclimated fish survived at the site with the second highest concentrations of Cd and Zn (0.90 and 238 ??g/L, respectively) compared with fish acclimated at the reference site (100% vs. 55%, respectively). Survival was 65% for acclimated fish and 0% for metal-nai??ve fish at the site with the largest metal concentrations (2.2 ??g/L Cd and 856 ??g/L Zn). Water collected from the site with the largest concentrations of dissolved metals (on October 30, 2002) was used in a laboratory serial dilution to determine 96-hour LC50 values. The 96-hour LC50 estimates of nai??ve fish during the in situ and laboratory experiments were similar (0.60 ??g Cd/L and 226 ??g Zn/L for in situ and 0.64 ??g Cd/L and 201 ??g Zn/L for laboratory serial dilutions). However, mortality of nai??ve cutthroat trout tested under laboratory conditions was more rapid in dilutions of 100%, 75%, and 38% site water than in situ experiments. ?? 2007 Springer Science+Business Media, LLC.

Archives of Environmental Contamination and Toxico↗

USGS2006

Light-mediated Zn uptake in photosynthetic biofilm

Our experiments conducted under controlled laboratory conditions demonstrate diel uptake and release of zinc (Zn) in lab-cultured biofilm exposed to Zn concentrations that are present in some mining-impacted streams (1–2 mg Zn/l). Specifically, at constant pH, temperature, and aqueous Zn concentrations in the exposure water, biofilm accumulated Zn during the light periods of the photocycle and released Zn during the dark periods of the photocycle. The range of Zn uptake measured in biofilm during one light period in these laboratory experiments (0.6–8.3 mg Zn/g dw biofilm) encompassed the estimated Zn uptake (1.5–3.7 mg Zn/g dw biofilm) necessary to attribute aqueous diel Zn cycling in a mining-impacted stream in Montana (High Ore Creek) to uptake in biofilm. This is relevant to in situ studies of diel Zn cycling because we controlled three important parameters that naturally fluctuate daily in the field, thus demonstrating the potential for biofilm to remove large percentages of Zn from some mining-impacted streams. Researchers, modelers, regulators, and reclamation teams working in metals-contaminated streams should be aware of diel metal cycling, because the highest Zn concentrations (and therefore, perhaps the most toxic conditions) in the water column might occur at night, and the greatest exposure of grazers of phototrophs to dietborne Zn might occur during daylight hours.

Hydrobiologia↗

USGS2006

Biomonitoring in the Boulder River watershed, Montana, USA: metal concentrations in biofilm and macroinvertebrates, and relations with macroinvertebrate assemblage

Portions of the Boulder River watershed contain elevated concentrations of arsenic, cadmium, copper, lead, and zinc in water, sediment, and biota. We measured concentrations of As, Cd, Cu, Pb, and Zn in biofilm and macroinvertebrates, and assessed macroinvertebrate assemblage and aquatic habitat with the objective of monitoring planned remediation efforts. Concentrations of metals were generally higher in downstream sites compared with upstream or reference sites, and two sites contained metal concentrations in macroinvertebrates greater than values reported to reduce health and survival of resident trout. Macroinvertebrate assemblage was correlated with metal concentrations in biofilm and macroinvertebrates. However, macroinvertebrate metrics were significantly correlated with a greater number of biofilm metals (8) than metals in invertebrates (4). Lead concentrations in biofilm appeared to have the most significant impact on macroinvertebrate assemblage. Metal concentrations in macroinvertebrates were directly proportional to concentrations in biofilm, indicating biofilm as a potential surrogate for monitoring metal impacts in aquatic systems.

Environmental Monitoring and Assessment↗

USGS2006

The potential for chromium to affect the fertilization process of Chinook salmon ( Oncorhynchus tshawytscha ) in the Hanford Reach of the Columbia River, Washington, USA

The Hanford Nuclear Reservation in south central Washington was claimed by the federal government as a site for the production of plutonium. During the course of production and operation of the facilities at Hanford, radionuclides and chromium were discharged directly into the river and also contaminated the groundwater. This study was designed to assess the effects of chromium (Cr) on Chinook salmon (Oncorhynchus tshawytscha) fertilization under exposure conditions similar to those of the Hanford Reach of the Columbia River. Chinook salmon gametes were exposed to aqueous Cr concentrations ranging from 0 to 266 μg Cr l−1. The current ambient water-quality criteria (AWQC) established for the protection of aquatic life (United States Environmental Protection Agency [USEPA] 1986) is 11 μg Cr l−1. Cr has been measured in pore water from bottom sediments of the Columbia River at concentrations >600 μg Cr l−1. Under exposure conditions designed to closely mimic events that occur in the river, the fertilization of Chinook salmon eggs was not affected by concentrations of Cr ranging from 11 to 266 μg Cr l−1. Data suggest that the instantaneous nature of fertilization likely limits the potential effects of Cr on fertilization success. As a result, the current AWQC of 11 μg Cr l−1 is most likely protective of Chinook salmon fertilization.

Oregon↗

USGS2006

The effect of chronic chromium exposure on the health of Chinook salmon (Oncorhynchus tshawytscha)

This study was designed to determine fish health impairment of Chinook salmon ( Oncorhynchus tshawytscha ) exposed to chromium. Juvenile Chinook salmon were exposed to aqueous chromium concentrations (0–266 μg l −1 ) that have been documented in porewater from bottom sediments and in well waters near salmon spawning areas in the Columbia River in the northwestern United States. After Chinook salmon parr were exposed to 24 and 54 μg Cr l −1 for 105 days, neither growth nor survival of parr was affected. On day 105, concentrations were increased from 24 to 120 μg Cr l −1 and from 54 to 266 μg Cr l −1 until the end of the experiment on day 134. Weight of parr was decreased in the 24/120 μg Cr l −1 treatment, and survival was decreased in the 54/266 μg Cr l −1 treatment. Fish health was significantly impaired in both the 24/120 and 54/266 μg Cr l −1 treatments. The kidney is the target organ during chromium exposures through the water column. The kidneys of fish exposed to the greatest concentrations of chromium had gross and microscopic lesions (e.g. necrosis of cells lining kidney tububules) and products of lipid peroxidation were elevated. These changes were associated with elevated concentrations of chromium in the kidney, and reduced growth and survival. Also, variations in DNA in the blood were associated with pathological changes in the kidney and spleen. These changes suggest that chromium accumulates and enters the lipid peroxidation pathway where fatty acid damage and DNA damage (expressed as chromosome changes) occur to cause cell death and tissue damage. While most of the physiological malfunctions occurred following parr exposures to concentrations ≥120 μg Cr l −1 , nuclear DNA damage followed exposures to 24 μg Cr l −1 , which was the smallest concentration tested. The abnormalities measured during this study are particularly important because they are associated with impaired growth and reduced survival at concentrations ≥120 μg Cr l −1 . Therefore, these changes can be used to investigate the health of resident fish in natural waters with high chromium concentrations as well as provide insight into the mechanisms of chromium toxicity.

Aquatic Toxicology↗

USGS2005

Leachability of protein and metals incorporated into aquatic invertebrates: are species and metals-exposure history important?

To partially simulate conditions in fish intestinal tracts, we leached six groups of metals-contaminated invertebrates at pH 2 and pH 7, and analyzed the concentrations of four metals (Cd, Cu, Pb, and Zn) and total protein in the leachates. Four of the groups of invertebrates were benthic macroinvertebrates collected from metals-contaminated rivers (the Clark Fork River in Montana and the Coeur d’Alene River in Idaho, USA); the other two groups of invertebrates (one of which was exposed to metals in the laboratory) were laboratory-reared brine shrimp ( Artemia sp.). Additionally, we fractionated the pH 2 leachates using size-exclusion chromatography (SEC). Protein content was 1.3 to 1.4× higher in Artemia than in the benthic macroinvertebrates, and leachability of metals and protein differed considerably among several of the groups of invertebrates. In SEC fractions of the pH 2 leachates from both groups of Artemia , Cu and protein co-eluted; however, Cu and protein did not co-elute in SEC fractions of the leachates from any of the benthic macroinvertebrate groups. Although none of the other three metals co-eluted with protein in any of the pH 2 leachates, one or more of the metals co-eluted with lower-molecular-weight molecules in the leachates from all of the groups of invertebrates. These results suggest fundamental differences in metal-binding properties and protein leachability among some invertebrates. Thus, different invertebrates and different histories of metals exposure might lead to different availability of metals and protein to predators.

Archives of Environmental Contamination and Toxico↗

USGS2005

Does biofilm contribute to diel cycling of Zn in High Ore Creek, Montana?

Concentrations of metals cycle daily in the water column of some mining-impacted streams in the Rocky Mountains of the western USA. We hypothesized that biofilm in High Ore Creek, Montana, USA, sorbs and releases Zn on a diel cycle, and this uptake-and-release cycle controls the total and dissolved (0.45-μm filtered) Zn concentrations. We collected water samples from three sites (upstream, middle and downstream at 0, 350 and 650 m, respectively) along a 650-m reach of High Ore Creek during a 47-h period in August 2002 and from the upstream and downstream sites during a 24-h period in August 2003; we also collected biofilm samples at these sites. In 2002 and 2003, total and dissolved Zn concentrations did not exhibit a diel cycle at the upstream sampling site, which was ~30 m downstream from a settling pond through which the creek flows. However, total and dissolved Zn concentrations exhibited a diel cycle at the middle and downstream sampling sites, with the highest Zn concentrations occurring at dawn and the lowest Zn concentrations occurring during late afternoon (>2-fold range of concentrations at the downstream site). Based on (1) concentrations of Zn in biofilm at the three sites and (2) results of streamside experiments that demonstrated Zn uptake and release by naïve biofilm during the light and dark hours of a photocycle, respectively, we conclude that Zn uptake in photosynthetic biofilms could contribute a large percentage to the cycling of Zn concentrations in the water column in High Ore Creek.

Montana↗

USGS2004

Winter habitat use by cutthroat trout in the Snake River near Jackson, Wyoming

Winter habitat use by Yellowstone cutthroat trout Oncorhynchus clarki bouvieri was monitored with radiotelemetry during November-March 1998-2001 in channelized and unaltered sections of the Snake River near Jackson, Wyoming. The use of run and off-channel pool habitat was significantly correlated to water temperature; run use was most frequent when mean water temperature exceeded 1.0 ° C, and off-channel pool use was greatest when mean water temperature was below 1.0 ° C. Available habitat was surveyed during winter 1999-2000 and was compared with actual habitat use. This comparison indicated that cutthroat trout avoided riffle habitat, selected deep runs, and strongly selected off-channel pool habitat. Large, deep, off-channel pools with groundwater influence were uncommon in the study area but were frequently selected as over-wintering habitat in the channelized section during all three study years. During 2000-2001, mainstem water temperatures were significantly colder than in 1998-1999 or 1999-2000, and anchor ice was observed more frequently in 2000-2001 than in 1998-1999 or 1999-2000 (on 18 d versus 5 d and 3 d, respectively). Mean water temperatures in off-channel pools were not significantly different among years. Depth and shelf ice were most frequently identified as cover elements in the channelized section. Run habitat was more common and used more frequently upstream of the channelized section. Large woody debris was more common and selected more frequently as cover in the unaltered section than in the channelized section.

Wyoming↗

USGS2001

Naturalized salmonid populations occur in the presence of elevated trace element concentrations and temperatures in the firehole river, Yellowstone National Park, Wyoming, USA

We investigated the effects of geothermally influenced waters on the distribution of rainbow trout, Oncorhynchus mykiss , and brown trout, Salmo trutta , in the Firehole River and its tributaries in Yellowstone National Park (WY, USA) from June 1997 to June 1998. Geothermal features in the Firehole River basin elevate mineral content and temperature in portions of the river and its tributaries. We found concentrations of boron and arsenic to be elevated in geothermally influenced areas compared with upstream sites. Boron concentrations occasionally exceeded 1,000 μg/L, a proposed limit for the protection of aquatic organisms. Arsenic concentrations occasionally exceeded 190 μg/L, the chronic ambient water quality criterion. Temperatures in geothermally influenced sites ranged up to 30°C and were consistently 5 to 10°C higher than upstream sites unaffected by geothermal inputs. Rainbow trout occurred at sites with elevated concentrations of boron, arsenic, and other trace elements and elevated water temperatures. Rainbow trout inhabited and spawned at sites with the most elevated trace element concentrations and temperatures; however, brown trout were absent from these sites. Water temperature may be the major factor determining brown trout distributions, but we cannot exclude the possibility that brown trout are more sensitive than rainbow trout to boron, arsenic, or other trace elements. Further investigations are needed to determine species-specific tolerances of boron, arsenic, and other trace elements among salmonids.

Wyoming↗

USGS2001

Backcountry water quality in Grand Teton National Park

Over the past several decades, visitor use of the backcountry areas of Grand Teton National Park (Wyoming) has dramatically increased. The water quality of clear, sparkling mountain streams and lakes is being impacted by concentrated recreational use where, because of the potential for future wilderness designation, no restroom facilities are available. Park officials are concerned about the impacts that these activities have on water quality, and that the consumption of untreated water from these areas may pose a hazard to human health.

Park Science↗

USGS2000

Distribution of metals during digestion by cutthroat trout fed benthic invertebrates contaminated in the Clark Fork River, Montana and the Coeur d'Alene River, Idaho, U.S.A., and fed artificially contaminated Artemia

The concentrations of essential amino acids in three, undigested invertebrate diets collected from the Clark Fork River (CFR) for cutthroat trout were similar to each other, but were c. 25–75% less than Artemia that were exposed to a mixture of arsenic, copper, cadmium, lead and zinc in the laboratory. The Artemia diet appeared less palatable and the texture, quantity and appearance of the intestinal contents differed between fish fed the Artemia and CFR diets. The Pb% in the fluid fraction of the intestinal contents was greater for the Artemia (29%) than for the CFR diets (10–17%), and the Cu% in the amino acid plus metal fraction of the intestinal contents was greater for the Artemia (78%) than for two of the three CFR diets (67% and 70%). Intestinal contents of fish fed invertebrate diets collected from various sites on the Coeur d'Alene River (CDA), Idaho, were similar in texture, quantity, and appearance. For fish fed the CDA diets, differences in the distribution of metals among fractions of the digestive fluids appeared to be related to concentrations of metals in the invertebrate diets. Pb% was lowest of all metals in the fluid portion of the intestinal contents. However, >80% of all metals in the hind gut were associated with the particulate fraction where they may still be available for uptake through pinocytosis.

Journal of Fish Biology↗

USGS1999

Movements of adult chinook salmon during spawning migration in a metals-contaminated system, Coeur d'Alene River, Idaho

Spawning migration of adult male chinook salmon Oncorhynchus tshawytscha was monitored by radio telemetry to determine their response to the presence of metals contamination in the South Fork of the Coeur d'Alene River, Idaho. The North Fork of the Coeur d'Alene River is relatively free of metals contamination and was used as a control. In all, 45 chinook salmon were transported from their natal stream, Wolf Lodge Creek, tagged with radio transmitters, and released in the Coeur d'Alene River 2 km downstream of the confluence of the South Fork and the North Fork of the Coeur d'Alene River. Fixed telemetry receivers were used to monitor the upstream movement of the tagged chinook salmon through the confluence area for 3 weeks after release. During this period, general water quality and metals concentrations were monitored in the study area. Of the 23 chinook salmon observed to move upstream from the release site and through the confluence area, the majority (16 fish, 70%) moved up the North Fork, and only 7 fish (30%) moved up the South Fork, where greater metals concentrations were observed. Our results agree with laboratory findings and suggest that natural fish populations will avoid tributaries with high metals contamination.

Transactions of the American Fisheries Society↗

USGS1999

Dietary effects of metals-contaminated invertebrates from the Coeur d'Alene River, Idaho, on cutthroat trout

Benthic macroinvertebrates with elevated concentrations of metals were collected from the Coeur d'Alene (CDA) River, Idaho, pasteurized, and fed to cutthroat trout Oncorhynchus clarki in the laboratory from start of feeding until 90 d posthatch. Invertebrates were collected from two sites known to contain elevated concentrations of metals: near Pinehurst in the South Fork of the CDA River and at Cataldo, approximately 5 km below the confluence of the South Fork and the North Fork. Invertebrates collected from a relatively clean site in the North Fork were used as a reference diet. We performed measurements of fish health that indicate reduced fitness of fish fed the South Fork and Cataldo diets. Effects measured were reduced feeding activity, increased number of macrophage aggregates and hyperplasia of cells in the kidney, degeneration of mucosal epithelium in the pyloric caecae, and metallothionein induction. These effects would likely reduce growth and survival of fish in the wild. Vacuolization of glial cells were also observed in fish fed the Cataldo diet. Metals in the water often exacerbated the histological effects observed. Although the invertebrates collected near Cataldo had lower concentrations of arsenic (As), cadmium (Cd), copper (Cu), lead (Pb), and zinc (Zn) than the invertebrates from the South Fork, fish fed the Cataldo diet had equally high or higher concentrations of all metals except as by day 44. The Cataldo diet also caused the most deleterious effects on survival and growth. These findings are especially important for early life stage fish, whose diet consists wholly of benthic macroinvertebrates. Therefore, fish feeding on invertebrates in the CDA River below the Bunker Hill smelting complex are at risk of reduced fitness.

Transactions of the American Fisheries Society↗

USGS1998

Concentrations of metals associated with mining waste in sediments, biofilm, benthic macroinvertebrates, and fish from the Coeur d'Alene River Basin, Idaho

Arsenic, Cd, Cu, Pb, Hg, and Zn were measured in sediments, biofilm, benthic macroinvertebrates, and fish from the Coeur d'Alene (CDA) River to characterize the pathway of metals transfer between these components. Metals enter the CDA Basin via tributaries where mining activities have occurred. In general, the ranking of food-web components from the greatest to smallest concentrations of metals was as follows: biofilm (the layer of abiotic and biotic material on rock surfaces) and sediments > invertebrates > whole fish. Elevated Pb was documented in invertebrates, and elevated Cd and Zn were documented in sediment and biofilm approximately 80 km downstream to the Spokane River. The accumulation of metals in invertebrates was dependent on functional feeding group and shredders-scrapers that feed on biofilm accumulated the largest concentrations of metals. Although the absolute concentrations of metals were the largest in biofilm and sediments, the metals have accumulated in fish approximately 50 km downstream from Kellogg, near the town of Harrison. While metals do not biomagnify between trophic levels, the metals in the CDA Basin are bioavailable and do biotransfer. Trout less than 100 mm long feed exclusively on small invertebrates, and small invertebrates accumulate greater concentrations of metals than large invertebrates. Therefore, early-lifestage fish may be exposed to a larger dose of metals than adults.

Archives of Environmental Contamination and Toxico↗

USGS1998

Relationships between Boron concentrations and trout in the firehole river, Wyoming: Historical information and preliminary results of a field study

The Firehole River (FHR) in Yellowstone National Park (YNP) is a world- renowned recreational fishery that predominantly includes rainbow trout (RBT, Oncorhynchus mykiss) and brown trout (BNT, Salmo trutta). The trout populations apparently are closed to immigration and have been self- sustaining since 1955. Inputs from hot springs and geysers increase the temperature and mineral content of the water, including elevating the boron (B) concentrations to a maximum of ~1 mg B/L. Both RBT and BNT reside in warm-water reaches, except when the water is extremely warm (???~25??C) during midsummer. They spawn in late fall and early winter, with documented spawning of BNT in the cold-water reach upstream from the Upper Geyser Basin and of RBT in the Lower Geyser Basin reach, where water temperatures presumably are the warmest; however, successful recruitment of RBT in waters containing ~1 mg B/L has not been demonstrated conclusively. Thus, we began investigating the relationships among temperature, B concentrations, other water-quality parameters, and the distribution and reproduction of trout in the FHR in spring 1997. However, atypical high water flows and concomitant lower than historical temperatures and B concentrations during summer 1997 preclude conclusions about avoidance of high B concentrations.

Conference Paper↗