Geology topics

A. T. Taylor

Publications and source records attributed to A. T. Taylor.

7 recordsLinked to original sources

USGS2020

Sibship reconstruction with SNPs illuminates the scope of a cryptic invasion of Asian Swamp Eels (Monopterus albus) in Georgia, USA

Cryptic invasive species are particularly problematic to study, manage, and control because of the difficulty detecting these species within their invaded habitats. Such is the case of the Asian Swamp Eel ( Monopterus albus ; ASE) where it is established in vegetated marshes along the Chattahoochee River, Georgia. Adult eels have been nearly impossible to detect or quantify with traditional sampling, although leaf-litter trapping of juvenile ASEs has been somewhat successful. In this study, we leveraged a collection of juveniles from the 2015 cohort and used single-nucleotide polymorphisms to reconstruct sibship among these juveniles in COLONY. Sibship reconstruction allowed us to learn about adult breeding behaviors and provided the first quantified estimates of breeder abundance. Pedigree reconstruction revealed that adults of both sexes were polygamous and likely traveled up to 0.5 km among marsh habitats during a single breeding season. Estimates of the number of breeding adults contributing to offspring ( N s ) and the effective number of breeders ( N b ) indicated an approximate minimum bound of 100 breeding adults in the marshes in 2015. Our study updated the invasion status of a cryptic population formerly riddled with uncertainty, highlighting that low captures of adult eels in the study area have been the result of low detectability, not low abundance. Given that low detectability would likely hinder removal efforts, our results suggest that future efforts could focus on suppression of ASE abundance when they are most vulnerable to capture and containing the spatial extent of the invasion.

Georgia↗

USGS2020

A conservation-oriented SNP panel for Smallmouth Bass (Micropterus dolomieu), with emphasis on Interior Highlands lineages

The Smallmouth Bass ( Micropterus dolomieu ; SMB) is a widely distributed black bass species, but the southwestern edge of the species range within the Interior Highlands contains some of the most divergent ecotypes. The Neosho subspecies ( M. d. velox ) inhabits tributaries of the Arkansas River within the Ozark Mountains and a second lineage is reported from drainages of the Ouachita Mountains. We sought to develop a single nucleotide polymorphism (SNP) panel to (1) diagnose hybridization with sympatric Spotted Bass ( Micropterus punctulatus ; SPB) and non-native Northern SMB ( M. d. dolomieu ) stocked in the region, and (2) delineate population structure within the ranges of the Neosho and Ouachita SMB lineages. We obtained 76 individual SMB samples from across their range but concentrated within the Interior Highlands ( n = 50). We also included 3 SPB to allow for hybrid detection and 3 Shoal Bass ( Micropterus cataractae ) as an outgroup. Phylogenetic trees constructed with the generated SNP data corroborated the existence of at least three major lineages of SMB (Northern, Neosho, and Ouachita), each containing varying degrees of differentiation among major drainages. Simulation analyses revealed that chosen SNPs had high power (> 0.9) to assign SMB × SPB hybrid categories and similarly high power (> 0.8) for Northern SMB × Interior Highlands SMB hybrids. Clustering methods delineated major inter-basin population structure within the native ranges of Neosho and Ouachita SMB with chosen SNPs. Anticipated uses of the resulting 192-loci SNP panel include conservation planning, fisheries management assessments, and ecological investigations of the Neosho and Ouachita SMB lineages.

Arkansas, Missouri, Oklahoma↗

USGS2020

Complex patterns of genetic and morphological differentiation in the Smallmouth Bass subspecies (Micropterus dolomieu dolomieu and M. d. velox) of the Central Interior Highlands

Due to geologic processes and recent anthropogenic introductions, patterns of genetic and morphological diversity within the Smallmouth Bass ( Micropterus dolomieu ), which are endemic to the central and eastern United States (USA), are poorly understood. We assessed genetic and morphological differentiation between the widespread Northern Smallmouth Bass ( M. d. dolomieu ) and the more restricted Neosho Smallmouth Bass ( M. d. velox ) where their ranges meet in the Central Interior Highlands ecoregion (CIH). Data from 14 microsatellite loci were used to conduct S TRUCTURE and principal components analyses to evaluate diversity across populations and screen for hybridization with sympatric Spotted Bass ( M. punctulatus ). We also tested for morphological differences using five morphometric traits and one meristic trait. We found support for three genetic clusters corresponding to previously described taxonomic variation; five clusters largely corresponding to river systems; and nine clusters representing hierarchical population structure within both ranges. We found evidence of a unique genetic cluster in tributaries of the White River within the Northern Smallmouth Bass range and admixture between the subspecies throughout the Neosho range. We also found evidence of morphological differentiation between subspecies; Neosho Smallmouth Bass exhibited larger head length than Northern Smallmouth Bass relative to total length, and there was a significant interaction of subspecies and orbital length, possibly indicating differential growth patterns between subspecies. Our results reveal multiple levels of divergence, suggesting the CIH harbors greater and more complex Smallmouth Bass diversity than previously thought.

Arkansas, Illinois, Kansas, Mississippi, Missouri,↗

USGS2020

Estimating the invasion extent of Asian swamp eel (Monopterus: Synbranchidae) in an altered river of the south-eastern United States

The first reported invasion of Asian swamp eels ( Monopterus albus , ASE) in the continental United States was in the state of Georgia in 1994. This population was first discovered within several ponds on a private nature centre, but the ponds drained via an outflow pipe into marsh habitats along the Chattahoochee River. Our objective was to delineate the current invasion extent of ASE in the Chattahoochee River, Georgia, by sampling juvenile ASE within an occupancy modelling framework. We sampled 111 and 100 sites in 2015 and 2016 respectively, on 10 occasions, each within a 2-km radius of the purported invasion point to estimate the spatial extent of their invasion in this system. Leaf-litter traps (LLTs) were effective at documenting an increase in the invasion extent of ASE, from within 100 m of the Chattahoochee Nature Center pond outflow to 1.6 km away. Documenting the extent of invasion of this population has proven elusive in the past, but the use of LLTs to target juvenile eels has documented a larger invasion extent than previously known in the study system. The results of this research can be used to develop effective control and management strategies, such as locating potential breeding areas for targeted removal sampling.

Georgia↗

USGS2019

Spatial sampling bias and model complexity in stream-based species distribution models: A case study of Paddlefish (Polyodon spathula) in the Arkansas River basin, USA

Leveraging existing presence records and geospatial datasets, species distribution modeling has been widely applied to informing species conservation and restoration efforts. Maxent is one of the most popular modeling algorithms, yet recent research has demonstrated Maxent models are vulnerable to prediction errors related to spatial sampling bias and model complexity. Despite elevated rates of biodiversity imperilment in stream ecosystems, the application of Maxent models to stream networks has lagged, as has the availability of tools to address potential sources of error and calculate model evaluation metrics when modeling in nonraster environments (such as stream networks). Herein, we use Maxent and customized R code to estimate the potential distribution of paddlefish ( Polyodon spathula ) at a stream-segment level within the Arkansas River basin, USA, while accounting for potential spatial sampling bias and model complexity. Filtering the presence data appeared to adequately remove an eastward, large-river sampling bias that was evident within the unfiltered presence dataset. In particular, our novel riverscape filter provided a repeatable means of obtaining a relatively even coverage of presence data among watersheds and streams of varying sizes. The greatest differences in estimated distributions were observed among models constructed with default versus AIC C -selected parameterization. Although all models had similarly high performance and evaluation metrics, the AIC C -selected models were more inclusive of westward-situated and smaller, headwater streams. Overall, our results solidified the importance of accounting for model complexity and spatial sampling bias in SDMs constructed within stream networks and provided a roadmap for future paddlefish restoration efforts in the study area.

Arkansas, Colorado, Kansas, Missouri, Nebraska, Ne↗

USGS2018

Hybridization and genetic structure of Neosho Smallmouth Bass in the Ozark Highlands

The Neosho Smallmouth Bass Micropterus dolomieu velox is endemic to Arkansas River tributaries originating in the Ozark Highlands and Boston Mountains. Although morphologically and genetically distinct from other populations of Smallmouth Bass M. dolomieu , the conservation‐genetic status of Neosho Smallmouth Bass is largely unknown. To assist in filling this data gap, we quantified introgressive hybridization, genetic diversity, and population structure of Neosho Smallmouth Bass in two major river basins (Grand River and Illinois River) using seven polymorphic microsatellite markers. Introgressive hybridization with stocked Tennessee lake‐strain Smallmouth Bass was most prevalent in the Illinois River, wherein the overall genomic proportion of Neosho Smallmouth Bass alleles was only 0.422. After accounting for hybrid individuals, genetic diversity of Neosho Smallmouth Bass was generally higher in larger rivers and lower in smaller, isolated streams. Three distinct population clusters were identified at the uppermost level of genetic structure—one from the Illinois River basin and two from the Grand River basin. These three population boundaries accounted for approximately 7% of the hierarchical genetic variation within our data set, and substructure below the uppermost level accounted for an additional 2% of genetic variation. The population structure we discovered can provide a blueprint for management that conserves diversity within and among populations; for example, population boundaries can be used to determine brood source locations for supplemental stocking efforts to counter nonnative introgression. Introgressive hybridization with nonnative Smallmouth Bass appears to be the most pertinent threat to the Neosho Smallmouth Bass subspecies, which is of conservation value to the overall adaptability of Smallmouth Bass as a species.

Missouri, Oklahoma↗

USGS2018

Evaluation of ageing accuracy with complementary non‐lethal methods for slow‐growing, northern populations of shoal bass

In the upper Chattahoochee River basin, where some populations of shoal bass, Micropterus cataractae Williams & Burgess, are imperilled, age and growth data are lacking. Age and growth of shoal bass in this basin were assessed with non‐lethal means using scales and mark–recapture. Mark–recapture data allowed for estimation of accuracy and determination of effects of any scale‐based inaccuracies on growth models. Scale‐based age estimates were accurate for 57% of the samples, and errors of 1 to 3 years included equal numbers of over‐ and underestimates of age. von Bertalanffy growth models based on scale ages were similar to those based on mark–recapture ages for ages 3–8 but noticeably divergent for younger and older fish. Scales provided estimates of longevity up to 12 years of age, and growth models produced from mark–recapture suggest scale ages underestimated age, especially for older fish. These populations of shoal bass live longer and grow slower than other populations, suggesting regional management strategies may be needed.

Alabama, Florida, Gerogia↗